Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium743g00003 ATGAAGAGGTCTAGAGATGAAGTTTTCACTAGTTGTTCTCAACTCAAACGACCTGTGGTGTCTGCCCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGGAAGAGTGAAGGAACTCTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCATCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCGTCTGCAAGAAATTCTATTCTTCGTGATAGGAGTTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGTGATCCCAGTGTTGATCGTCCTGATCCAGATCAGGACAGAGGTTTATTAAGGATAGAAAAGGAGAGGAGACGTGCGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGCGAAAAGGATGATAGAGATTTTGAGCATGATAGGGAGCGATTTCCTCACAAACGTTCTCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAATTTTGGTACGCGTCCTATGTCATCCACTTGTGATGATAAAAATTCTCTGAAAAGTATGTACAGTCAAGAGTTCGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTTCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGAAAGGGAAAGAGAAAGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGATCGTGAGTTCCGAGAACGGGATAAATCCACTGTGATTGCCAACAAAGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTATCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAAAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATACGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAACAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCCTTAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATTAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACGGAAGATGTTGTCAAGACTAAGAATAATAGTGTCAAGAATGGCACTGCGAGTGTTGCTGAAAGTGATGGTAACCCTGTTGTGGGTGCTACCGTCATGAATCAAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTTTGCCAGTAGATCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGACGACCGTGTATTACATAAAACTGAAACTTTGGGAAATAATACACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCTAGTGAAAGGGTAGTGAATGCTAATGCCTCCCCCACATCTGGAATGGAACAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAGCTAGACCTGTTAATGCATCTGCTGAAGGAGGACCTGATATTCCACCTTCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGTCATCACTGGAGGCACCAAAGTCCACCGGTACCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTATTAGTCGGCCATATCAAGATAGACATGGGGACGATGTTTGTGGTGAAACTAGAGGAGAAAATGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGCAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGACGTTGAAGGAGATGGAATGTCATTGCCGTACTCTGAACGCTTTCTCCTAACTGTGAAGCCACTGGCAAAGCATGTTCTTCCAATGTTACATGAGAAGGACAGGAATTCAGGAGTTTTCTATGGAAACGATTCCTTTTATGTTCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAATGGAAAGCTTCGAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTTCAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAACTTCTACAACTACTTGCATATGAGAAGTCAAGAAAACCTGGAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGAGCAACGAAACTATCTATTCAACTGATGGACTCTGGACATGATAAACCCGAAGTGACTGCTGTTTCGATGGACCCTAATTTTTCAACCTATCTACTCAATGACTTCCTGTCTGTTGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTGAAAAGGAATAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAGATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAGTCTTGCATCCGAGGAGTTCAGGCACCCATGAACAGGCACAGTCTTCAAACATTCGTTCAAGAAGACTGCAACGATTCCGCAACATGTTTTCCATTACATGA 4281 0.4078 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDFEHDRERFPHKRSRKVEDSGAEPLLDADENFGTRPMSSTCDDKNSLKSMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEERERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKTKNNSVKNGTASVAESDGNPVVGATVMNQKHINVSRNGDGCLPVDQSTSSKAWQSNGDSGVREDRYLDDRVLHKTETLGNNTQHGKMNNIAFPPNELSGFNNKQDQSSERVVNANASPTSGMEQSNGRTNIDNLSGLTATPARPVNASAEGGPDIPPSEGGDSARPGTSTNGVITGGTKVHRYQEESVRPFKSEREEGELSPNGDFEEDNFAVYGGNGLDAVHKGKDGGISRPYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVLPMLHEKDRNSGVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALFSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLLAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGATKLSIQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRVLHPRSSGTHEQAQSSNIRSRRLQRFRNMFSIT 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium743g00003 1426 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Vium743g00003 1426 MobiDBLite consensus disorder prediction 965 983 - -
Vium743g00003 1426 Pfam C-terminal domain of Sin3a protein 1139 1385 IPR031693 -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 946 960 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 859 925 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 208 327 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 422 454 - -
Vium743g00003 1426 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Vium743g00003 1426 MobiDBLite consensus disorder prediction 820 845 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 820 840 - -
Vium743g00003 1426 ProSiteProfiles PAH domain profile. 329 398 IPR003822 GO:0006355
Vium743g00003 1426 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Vium743g00003 1426 SUPERFAMILY PAH2 domain 327 395 IPR036600 GO:0006355
Vium743g00003 1426 SMART hdac_interact2seq4b 493 593 IPR013194 -
Vium743g00003 1426 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 420 454 - -
Vium743g00003 1426 Pfam Sin3 family co-repressor 496 587 IPR013194 -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 1040 1054 - -
Vium743g00003 1426 FunFam Paired amphipathic helix protein SIN3 326 400 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 1067 1092 - -
Vium743g00003 1426 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Vium743g00003 1426 Gene3D Paired amphipathic helix 327 399 IPR036600 GO:0006355
Vium743g00003 1426 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Vium743g00003 1426 MobiDBLite consensus disorder prediction 859 995 - -
Vium743g00003 1426 Pfam Paired amphipathic helix repeat 351 395 IPR003822 GO:0006355
Vium743g00003 1426 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Vium743g00003 1426 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Vium743g00003 1426 MobiDBLite consensus disorder prediction 1008 1032 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 218 305 - -
Vium743g00003 1426 MobiDBLite consensus disorder prediction 1007 1092 - -
Vium743g00003 1426 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Vium743g00003 1426 Coils Coil 252 281 - -
Vium743g00003 1426 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Vium743g00003 1426 PANTHER SIN3B-RELATED 38 1283 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium743g00003 Vium-Chr743 6863 18938 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium743g00003 29 143 WRKY Transcription Factor Family AT4G12020 48.718 2.16e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium743g00003 Sin3a_C 1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium743g00003 K11644 - gmx:100811928 2519.19