Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium743g00001 ATGAAGAGGTCTAGAGATGAAGTTTTCACTAGTTGTTCTCAACTCAAACGACCTGTGGTGTCTGCCCGAGGAGAAGCGTCTGGGCAACCGCAGATGGCAAATGGAGGTGCTCAGAAATTGACAACTAATGATGCCCTAGCATATCTTAAAGCAGTAAAGGATATATTTCAAGATAAGAGGGACAAGTATGACGACTTTTTGGAGGTTATGAAAGATTTCAAGGCTCAAAGAATTGATACCGCGGGTGTCATTGGAAGAGTGAAGGAACTCTTTAAAGGCCATAGAGATCTTATATTGGGATTTAACACCTTCTTGCCTAAGGGGTATGAAATCACACTTCCGTCAGAGGATGAACAACCTGCTCCAAAGAAACCTGTTGAATTTGAAGAAGCTATAAATTTTGTGAACAAAATAAAGACTCGTTTTCAAGGCGACGATCATGTGTACAAATCATTTCTTGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACCGAGGTCTACCAGGAGGTTGCTGCTATTTTCCAGGACCATCCTGATCTTCTTGATGAGTTTACTCATTTTCTTCCAGACGCTTCTGCAGCTGCCTCTACTCATTATGCGTCTGCAAGAAATTCTATTCTTCGTGATAGGAGTTCAATGCCAACAGTACGGCCAATGCATGTTGAAAAGCGAGAAAGGACCATGGCTTCACATGGGGATCGTGATCCCAGTGTTGATCGTCCTGATCCAGATCAGGACAGAGGTTTATTAAGGATAGAAAAGGAGAGGAGACGTGCGGAGAAGGAAAAGGAACGCAGAGAAGATAGAGACAAGAGAGAACGCGAAAAGGATGATAGAGATTTTGAGCATGATAGGGAGCGATTTCCTCACAAACGTTCTCGTAAGGTTGAGGACTCTGGAGCTGAACCATTGCTTGATGCTGATGAAAATTTTGGTATGTACAGTCAAGAGTTCGCTTTCTGCGAAAAAGTCAAAGAAAAATTACGAAATCCTGATGACTATCAGGAATTTTTGAAGTGCTTACATATTTACAGCAGGGAAATAATTACCCGACAAGAGTTGCAGTCATTGGTGGGCGATTTACTGGGAAAGTATCCAGATCTTATGGAGGGGTTTAATGAATTTTTGCTACAATCTGAAAAAAATGATGGTGGATTTCTTGCTGGTGTTATGAATAAAAAGTCCTTATGGAATGATGGACATGGACTGAAACAAATGAAGGGTGAAGAAAGGGAAAGAGAAAGGGATCGAGATAGAGACCGTTATAGGGATGATGGGATGAAAGAAAGGGATCGTGAGTTCCGAGAACGGGATAAATCCACTGTGATTGCCAACAAAGATGTTTTAGGTTCTAAGATGTCTCTATATCCCAGCAAGGATAAGTATTTATCAAAACCTATAAATGAGCTGGACCTTTCTAACTGCGACCAGTGTACTCCTAGTTATCGGCTCTTACCAAAAAATTACCCAATACCTATAGCTAGCCAAAAAACAGAACTTGGTGCTGAAGTGTTGAATGATCACTGGGTGTCTGTCACTTCAGGAAGTGAGGATTACTCCTTCAAACATATGCGCAAAAATCAGTATGAAGAGAGCTTGTTTAGATGCGAAGATGACAGGTTTGAACTTGACATGTTGTTAGAGTCTGTGAATGTGACAACCAAACGAGTAGAAGAGCTGTTAGACAAGATCAATAATAATACAATTAAAGGAGACATCCCAATTCGTATTGAGGAGCACTTAACAGCTATAAATCTTAGGTGTATTGAACGATTATACGGTGATCATGGGCTTGATGTGATGGAAGTGTTAAGGAAGAATGCACCTCTAGCTTTGCCAGTGATATTAACACGCTTGAAACAGAAACAGGAAGAGTGGGCAAGGTGCCGTGCTGATTTTAGTAAAGTTTGGGCTGAAATATATTCTAAGAACTATCACAAATCTCTTGATCATCGTAGCTTCTACTTTAAGCAGCAGGATACAAAAAGCCTTAGCACCAAAGCCTTGCTGGCAGAAATCAAAGAAATTAGTGAAAAGAAACGCAAAGAAGATGATGTTCTTCTTGCTATTGCTGCTGGAAACAGACGGCCAATTCTTCCAAACTTGGAGTTTAAGTATTCTGATCTAGATATTCATGAAGATTTGTATCAGCTCATAAAATATTCCTGTGGAGAAATTTGCACAACCGAACATGTGGATAAAGTTATGAAGGTTTGGACAACATTTTTAGAGCCCATGCTTTGTGTTCCTTCTCGGCCCCAGGGTGCAGAGGATACGGAAGATGTTGTCAAGACTAAGAATAATAGTGTCAAGAATGGCACTGCGAGTGTTGCTGAAAGTGATGGTAACCCTGTTGTGGGTGCTACCGTCATGAATCAAAAGCATATAAATGTTTCCAGAAATGGGGATGGTTGTTTGCCAGTAGATCAATCAACTTCTAGTAAAGCATGGCAATCAAATGGTGATAGTGGGGTTAGAGAGGATAGGTATCTTGACGACCGTGTATTACATAAAACTGAAACTTTGGGAAATAATACACAGCATGGTAAAATGAATAATATTGCTTTCCCACCTAATGAACTATCAGGATTTAATAATAAGCAAGACCAGTCTAGTGAAAGGGTAGTGAATGCTAATGCCTCCCCCACATCTGGAATGGAACAAAGCAATGGAAGGACAAACATAGATAATTTGTCAGGACTCACTGCCACTCCAGCTAGACCTGTTAATGCATCTGCTGAAGGAGGACCTGATATTCCACCTTCAGAGGGTGGTGATTCTGCAAGACCAGGTACATCCACAAATGGGGTCATCACTGGAGGCACCAAAGTCCACCGGTACCAAGAGGAATCAGTTCGACCCTTCAAAAGTGAAAGAGAAGAGGGTGAGTTATCTCCTAATGGAGACTTTGAAGAAGATAACTTTGCAGTTTATGGAGGTAATGGTTTGGATGCAGTGCATAAAGGAAAGGATGGTGGTATTAGTCGGCCATATCAAGATAGACATGGGGACGATGTTTGTGGTGAAACTAGAGGAGAAAATGATGTTGATGCTGATGATGAAGGTGAAGAAAGTCCTCACAGGTCATCAGAGGACAGTGAAAATGCATCTGAAAATGTTGATGTTTCTGGCAGCGAGTCTGCTGATGGTGAGGAGTGTTCTCGGGAAGAGCATGAGGATGGAGAACATGATAACAAGGCTGAGAGTGAAGGTGAAGCTGAAGGAATAGCTGATGCCCATGACGTTGAAGGAGATGGAATGTCATTGCCGTACTCTGAACGCTTTCTCCTAACTGTGAAGCCACTGGCAAAGCATGTTCTTCCAATGTTACATGAGAAGGACAGGAATTCAGGAGTTTTCTATGGAAACGATTCCTTTTATGTTCTTTTTAGACTTCATCAGACATTGTATGAGAGGATACAATCAGCGAAGATTAACTCATCATCTGCTGATAGGAAATGGAAAGCTTCGAGTGATACAAGCTCCACTGATCAATATGACAGATTCATGAATGCCCTTTTCAGTTTGCTGGATGGTTCTTCTGATAATACAAAATTTGAGGATGATTGTCGAGCTATAATTGGAATTCAGTCATATGTCTTATTCACATTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCTGCTGATGAGATGGATAATAAACTTCTACAACTACTTGCATATGAGAAGTCAAGAAAACCTGGAAAATTTGTCGACATAGTTTATCATGAAAATGCCCGTGTTCTTCTCCATGATGAGAACATATATCGTATTGAATATTCACCTGGAGCAACGAAACTATCTATTCAACTGATGGACTCTGGACATGATAAACCCGAAGTGACTGCTGTTTCGATGGACCCTAATTTTTCAACCTATCTACTCAATGACTTCCTGTCTGTTGTCCCTGACAAAAAAGAGAAGTCAGGGATTTTCTTGAAAAGGAATAAACGTAGATATGCTGGTAGTGATGAATTTTCAAGCCAGGCTATGGAAGGACTACAGATTATTAATGGTCTGGAGTGCAAGATAGCTTGCAGTTCATCTAAGGTCTCTTACGTTTTAGATACTGAAGACTTTTTGTATCGGGTGAGAAGGAAACGAAGAGTCTTGCATCCGAGGAGTTCAGGCACCCATGAACAGGCACAGTCTTCAAACATTCGTTCAAGAAGACTGCAACGATTCCGCAACATGTTTTCCATTACATGA 4233 0.4082 MKRSRDEVFTSCSQLKRPVVSARGEASGQPQMANGGAQKLTTNDALAYLKAVKDIFQDKRDKYDDFLEVMKDFKAQRIDTAGVIGRVKELFKGHRDLILGFNTFLPKGYEITLPSEDEQPAPKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENKSITEVYQEVAAIFQDHPDLLDEFTHFLPDASAAASTHYASARNSILRDRSSMPTVRPMHVEKRERTMASHGDRDPSVDRPDPDQDRGLLRIEKERRRAEKEKERREDRDKREREKDDRDFEHDRERFPHKRSRKVEDSGAEPLLDADENFGMYSQEFAFCEKVKEKLRNPDDYQEFLKCLHIYSREIITRQELQSLVGDLLGKYPDLMEGFNEFLLQSEKNDGGFLAGVMNKKSLWNDGHGLKQMKGEERERERDRDRDRYRDDGMKERDREFRERDKSTVIANKDVLGSKMSLYPSKDKYLSKPINELDLSNCDQCTPSYRLLPKNYPIPIASQKTELGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEELLDKINNNTIKGDIPIRIEEHLTAINLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRADFSKVWAEIYSKNYHKSLDHRSFYFKQQDTKSLSTKALLAEIKEISEKKRKEDDVLLAIAAGNRRPILPNLEFKYSDLDIHEDLYQLIKYSCGEICTTEHVDKVMKVWTTFLEPMLCVPSRPQGAEDTEDVVKTKNNSVKNGTASVAESDGNPVVGATVMNQKHINVSRNGDGCLPVDQSTSSKAWQSNGDSGVREDRYLDDRVLHKTETLGNNTQHGKMNNIAFPPNELSGFNNKQDQSSERVVNANASPTSGMEQSNGRTNIDNLSGLTATPARPVNASAEGGPDIPPSEGGDSARPGTSTNGVITGGTKVHRYQEESVRPFKSEREEGELSPNGDFEEDNFAVYGGNGLDAVHKGKDGGISRPYQDRHGDDVCGETRGENDVDADDEGEESPHRSSEDSENASENVDVSGSESADGEECSREEHEDGEHDNKAESEGEAEGIADAHDVEGDGMSLPYSERFLLTVKPLAKHVLPMLHEKDRNSGVFYGNDSFYVLFRLHQTLYERIQSAKINSSSADRKWKASSDTSSTDQYDRFMNALFSLLDGSSDNTKFEDDCRAIIGIQSYVLFTLDKLIYKLVKQLQAVAADEMDNKLLQLLAYEKSRKPGKFVDIVYHENARVLLHDENIYRIEYSPGATKLSIQLMDSGHDKPEVTAVSMDPNFSTYLLNDFLSVVPDKKEKSGIFLKRNKRRYAGSDEFSSQAMEGLQIINGLECKIACSSSKVSYVLDTEDFLYRVRRKRRVLHPRSSGTHEQAQSSNIRSRRLQRFRNMFSIT 1410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium743g00001 1410 MobiDBLite consensus disorder prediction 949 967 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 930 944 - -
Vium743g00001 1410 FunFam Paired amphipathic helix protein SIN3 313 384 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 843 909 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 406 438 - -
Vium743g00001 1410 Gene3D Paired amphipathic helix 44 106 IPR036600 GO:0006355
Vium743g00001 1410 ProSiteProfiles PAH domain profile. 38 108 IPR003822 GO:0006355
Vium743g00001 1410 MobiDBLite consensus disorder prediction 804 829 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 804 824 - -
Vium743g00001 1410 SUPERFAMILY PAH2 domain 38 107 IPR036600 GO:0006355
Vium743g00001 1410 MobiDBLite consensus disorder prediction 208 306 - -
Vium743g00001 1410 Pfam C-terminal domain of Sin3a protein 1123 1369 IPR031693 -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 404 438 - -
Vium743g00001 1410 PANTHER SIN3B-RELATED 38 1267 IPR039774 GO:0003714
Vium743g00001 1410 Pfam Sin3 family co-repressor 480 571 IPR013194 -
Vium743g00001 1410 Pfam Paired amphipathic helix repeat 335 379 IPR003822 GO:0006355
Vium743g00001 1410 Pfam Paired amphipathic helix repeat 147 191 IPR003822 GO:0006355
Vium743g00001 1410 Pfam Paired amphipathic helix repeat 61 105 IPR003822 GO:0006355
Vium743g00001 1410 ProSiteProfiles PAH domain profile. 310 382 IPR003822 GO:0006355
Vium743g00001 1410 FunFam Paired amphipathic helix SIN3-like protein 123 194 - -
Vium743g00001 1410 FunFam Paired amphipathic helix protein Sin3 44 106 - -
Vium743g00001 1410 Gene3D Paired amphipathic helix 123 195 IPR036600 GO:0006355
Vium743g00001 1410 SMART hdac_interact2seq4b 477 577 IPR013194 -
Vium743g00001 1410 Gene3D Paired amphipathic helix 315 383 IPR036600 GO:0006355
Vium743g00001 1410 MobiDBLite consensus disorder prediction 1051 1076 - -
Vium743g00001 1410 SUPERFAMILY PAH2 domain 317 381 IPR036600 GO:0006355
Vium743g00001 1410 SUPERFAMILY PAH2 domain 122 193 IPR036600 GO:0006355
Vium743g00001 1410 ProSiteProfiles PAH domain profile. 124 194 IPR003822 GO:0006355
Vium743g00001 1410 MobiDBLite consensus disorder prediction 1024 1038 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 843 979 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 991 1076 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 218 305 - -
Vium743g00001 1410 MobiDBLite consensus disorder prediction 992 1016 - -
Vium743g00001 1410 Coils Coil 252 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium743g00001 Vium-Chr743 6863 18938 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium743g00001 29 143 WRKY Transcription Factor Family AT4G12020 48.718 2.16e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium743g00001 Sin3a_C 1e-60 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium743g00001 K11644 - gmx:100811928 2482.98