Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7435g00007 ATGGTACAAGCCAAGAAGTTCAGAGGAGTCAGGCAACGCCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCATCCTTTACTGAAGAGAAGGGTCTGGCTAGGCACGTTTGAGACAGCTGAGGCTGCTGCAAGGGCTTATGATCAAGCAGCCATTTTGATGAATGGCCAGAATGCCAAGACTAACTTCCCCAAGAACCAGGCTCAGCCTGATGCCACCACTTCCACCACCCCTTCTGCTGCTTCTGCTTCTGCTTCTGATCATGACAACGCTTTCTTATCTCCCAAAGCTCTTTCAGAACTCCTCAGCACTAAGCTCAGAAAGTACTGCAAAGACCCTGCTCCTTCTCTCACTTGTCTCAGGCTCGATGCCGATAACTCCCACATTGGAGTCTGGCAGAAAGGTGCAGGACCACATTCTGGCTCCAATTGGGTCATGAGGGTGGAGCTTGGGAAGAAGCAGACACAGAGTGAATCAGCATGGTCGCCCAGCAGTAGTGCTAATGACACTGCTGGAAACAATGGAGTAGTAGTAGTAGAAGAAGAGGAGGAGGAGGATAGACTCGCTTTGCAGATGATCGAGGAGCTACTCAATTGGAACTAG 600 0.5083 MVQAKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPKNQAQPDATTSTTPSAASASASDHDNAFLSPKALSELLSTKLRKYCKDPAPSLTCLRLDADNSHIGVWQKGAGPHSGSNWVMRVELGKKQTQSESAWSPSSSANDTAGNNGVVVVEEEEEEDRLALQMIEELLNWN 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7435g00007 199 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 FunFam Ethylene-responsive transcription factor 2 5 64 - -
Vium7435g00007 199 MobiDBLite consensus disorder prediction 60 87 - -
Vium7435g00007 199 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 163 - -
Vium7435g00007 199 MobiDBLite consensus disorder prediction 153 172 - -
Vium7435g00007 199 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 CDD AP2 5 63 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 Gene3D AP2/ERF domain 5 65 IPR036955 GO:0003700|GO:0006355
Vium7435g00007 199 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Vium7435g00007 199 SUPERFAMILY DNA-binding domain 6 64 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7435g00007 Vium-Chr7435 78158 79159 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7435g00007 1 198 AP2-EREBP Transcription Factor Family AT5G25390 58.586 4.93e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7435g00007 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7435g00007 - - gmx:100806821 268.47