Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7435g00003 ATGGGAGAAACCAAGGACAAAGCATATGAGGAAGAGCTTATTGACTACGAGGAGGAAGAAGACAAGGCTCCCGACTCCGTCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTACTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCAATTCTAGGAATGGATGTGATTTGCCAAGCGAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTCTGCAGCAGATTGATCCCGTTCCTGGCCAAGTTTCTGCTCTTGTTCTGTGCCATACTAGAGAATTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGTACCTATTTACCCGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTCGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCTTTGAAGAATGTGAGACATTTCATATTAGACGAATGTGACAAGATGCTGGAATCACTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATTCGTCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCGAAGTTGACACTTCACGGACTTGTGCAGCACTACATCAAATTGAAAGAAGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATCTTTGTTAAAAGTGTCAGTAGAGCAGCCGAGCTGGACAAACTACTCGTGGAGTGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCCCAGGAAGAAAGTGGCATTCTGGGTTTTGTTGCCTCATTTCTTTTAGTGGCCATGGTGAAATTGAAGATATAG 1041 0.4323 MGETKDKAYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEESGILGFVASFLLVAMVKLKI 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7435g00003 346 CDD DEADc_DDX39 45 252 - -
Vium7435g00003 346 Gene3D - 41 258 IPR027417 -
Vium7435g00003 346 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 326 - -
Vium7435g00003 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 227 326 IPR027417 -
Vium7435g00003 346 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 41 252 IPR027417 -
Vium7435g00003 346 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Vium7435g00003 346 SMART ultradead3 65 266 IPR014001 -
Vium7435g00003 346 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Vium7435g00003 346 Gene3D - 259 329 IPR027417 -
Vium7435g00003 346 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Vium7435g00003 346 MobiDBLite consensus disorder prediction 1 29 - -
Vium7435g00003 346 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7435g00003 Vium-Chr7435 35029 41442 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7435g00003 1 326 Eukaryotic Initiation Factors Gene Family AT5G11200 81.522 0.0 573
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7435g00003 K12812 - gmx:100808957 637.876