Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7435g00002 ATGGGAGAAACCAAGGACAAAGCATATGAGGAAGAGCTTATTGACTACGAGGAGGAAGAAGACAAGGCTCCCGACTCCGTCGGAGCTAAAGTCAACGGCGAAGCTACCAAGAAGGGCTATGTTGGAATTCACAGTTCAGGATTCAGAGACTTTCTTCTGAAGCCAGAGCTACTTCGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCAATTCTAGGAATGGATGTGATTTGCCAAGCGAAATCTGGAATGGGAAAGACTGCTGTCTTTGTTCTCTCGACTCTGCAGCAGATTGATCCCGTTCCTGGCCAAGTTTCTGCTCTTGTTCTGTGCCATACTAGAGAATTAGCATACCAGATATGCCATGAGTTTGAGAGGTTCAGTACCTATTTACCCGATCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGCTGAAAAATGAGTGCCCTCATATTGTTGTCGGAACACCTGGAAGAATACTAGCATTGACTAGGGATAAGGATCTTTCTTTGAAGAATGTGAGACATTTCATATTAGACGAATGTGACAAGATGCTGGAATCACTGGATATGAGGAAAGATGTTCAAGACATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCCGCAACACTCAGCAAGGAAATTCGTCCAGTCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTTGATGATGAGGCGAAGTTGACACTTCACGGACTTGTGCAGCACTACATCAAATTGAAAGAAGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTGGACTTTAATCAAGTTGTTATCTTTGTTAAAAGTGTCAGTAGAGCAGCCGAGCTGGACAAACTACTCGTGGAGTGCAACTTTCCTTCTATATGCATCCACTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAAGAAGGGCATACAAGAATTCTTGTCGCAACGGATTTGGTTGGAAGAGGGATTGACATTGAACGTGTCAACATTGTTATAAACTATGACATGCCTGATTCTGCAGACACGTACTTGCACAGGGTTGGTCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATTACATTTGTTTCTTGTTCCACCGATGTTGATGTTCTCAACAATGTTCAATCAAGGTTTGAGGTGGATATAAAACAGCTGCCAGAGCAGATTGATACCTCAACTTATATGCCGTCGTAG 1284 0.4307 MGETKDKAYEEELIDYEEEEDKAPDSVGAKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYMPS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7435g00002 427 CDD DEADc_DDX39 45 252 - -
Vium7435g00002 427 SMART helicmild6 302 383 IPR001650 -
Vium7435g00002 427 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Vium7435g00002 427 MobiDBLite consensus disorder prediction 1 29 - -
Vium7435g00002 427 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Vium7435g00002 427 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Vium7435g00002 427 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Vium7435g00002 427 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 397 IPR027417 -
Vium7435g00002 427 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Vium7435g00002 427 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
Vium7435g00002 427 SMART ultradead3 65 266 IPR014001 -
Vium7435g00002 427 Gene3D - 259 426 IPR027417 -
Vium7435g00002 427 Gene3D - 42 258 IPR027417 -
Vium7435g00002 427 CDD SF2_C_DEAD 263 392 - -
Vium7435g00002 427 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Vium7435g00002 427 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 401 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7435g00002 Vium-Chr7435 29342 41441 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7435g00002 1 427 Eukaryotic Initiation Factors Gene Family AT5G11200 82.942 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7435g00002 K12812 - gmx:100808957 837.795