Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7427g00003 ATGACCACCAGCATGAAGGTGCATCACTTCACACGTGCATTCTGGGAGCACGAACCCTTCCTCACCCTTGGCTGCAAGCGATTACGCCCTCTTGCTCCCAAGCTTCCCAACCTACACACCACCACCCCTTCTCTTCCTTTCGATCTCAAGAGCTTCATCAGACCAGAAAGTTGTCCCAGAAAACAAGTTTCCTCTCTCCACAATAACAAGGATCCACCTTCACCCCAAGGCCAGGTTGAAACGCATCCAGGAGGGACGCGGTGGAATCTGACGCAAGAACAGATAGGTATATTGGAGATGCTGTACAAAGGAGGGACGAGAACTCCAAATGCTCAGCAGATAGAGCAGATCACTGTTCAGTTAGGAAAGTACGGAAAGATCGAAGGGAAGAATGTGTTCTATTGGTTTCAGAATCACAAAGCACGCGAGAGACAAAAGCAGAAGCGTAACAGCCTTGCCTTTTCTCATAGTCCTCGAACTCCCACAATTCATTCTGTTGTTACTTTAGAGGCAGCAAAGGAGGAAGTAGTAGATAGAGACCAGGAGGAAGGTAGTCCGTACAAAAAGAAGTGTAGGAGATGGGTATTTGATTGTTTGGAAGAGCAAAGCATGTCGTCGTCATCAGTGTGTGAAGAGGAGGAACATAGAACTCTGGAGCTTTTCCCATTGCACCCGGAAGGAAGATGA 687 0.4789 MTTSMKVHHFTRAFWEHEPFLTLGCKRLRPLAPKLPNLHTTTPSLPFDLKSFIRPESCPRKQVSSLHNNKDPPSPQGQVETHPGGTRWNLTQEQIGILEMLYKGGTRTPNAQQIEQITVQLGKYGKIEGKNVFYWFQNHKARERQKQKRNSLAFSHSPRTPTIHSVVTLEAAKEEVVDRDQEEGSPYKKKCRRWVFDCLEEQSMSSSSVCEEEEHRTLELFPLHPEGR 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7427g00003 228 ProSiteProfiles 'Homeobox' domain profile. 81 146 IPR001356 GO:0003677
Vium7427g00003 228 MobiDBLite consensus disorder prediction 61 87 - -
Vium7427g00003 228 FunFam WUSCHEL-related homeobox 4 85 152 - -
Vium7427g00003 228 PANTHER WUSCHEL-RELATED HOMEOBOX 4 5 228 IPR044186 GO:0003700|GO:0010067|GO:0010087|GO:0051301
Vium7427g00003 228 SUPERFAMILY Homeodomain-like 82 153 IPR009057 -
Vium7427g00003 228 Gene3D - 86 151 - -
Vium7427g00003 228 CDD homeodomain 86 147 IPR001356 GO:0003677
Vium7427g00003 228 SMART HOX_1 83 150 IPR001356 GO:0003677
Vium7427g00003 228 MobiDBLite consensus disorder prediction 59 87 - -
Vium7427g00003 228 Pfam Homeodomain 86 145 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7427g00003 Vium-Chr7427 16039 17414 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7427g00003 5 152 Wox Gene Family AT1G46480 63.580 4.80e-61 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Vium7427g00003 Homeodomain 1.4e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7427g00003 - - gmx:100781015 392.504