Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7427g00002 ATGGCGCAAGTTCCTGACAATGATAGCAGTGAAGAGACGAATTCCAGGTTCCACACGGCGTTGTACGTTGGGGATCTTGACGAGACCATCGACGAGAGCCAGCTCTTTATTATCTTCGATCATGTTGCAAAAGTCCTTTCCGTTCGAATTTGCCGCGACTACGCAACTGGGAAGTCCCTTGGTTACGCCTACGTGAATTACAGTAGCCGTTACAATGCCGCTAAAGCAATAAAAGAGCTAAATTTCATTCCGGTGAATGGCAAAACCATTAGGGTAACGTATTCTAATCGGGACCCCAGTGTTCGTAAGAGTGGTAGAGCTAACCTTTATGTAAAGAATTTGGCTCCGTCAATCTATCACAAGGCTCTATACGATCTCTGTTCGTCTTTTGGGAATATTCTATCTTGCACGGTTGCAACGGATGCTTCTGGCCAGTCTAAAGGTTATGGTTTTGTGCAGTTTGAGAGCGAAGCATCTGCAGGAGAAGCGATTGAAAAGTTAAACGGCACGCTGCTCAAAGATAAAAAGATCTATATGGGTCCTTTCGTGTCAAAGCAGGACAGAGTGAATAGTGACGCAAACTTTTCAAATGTTTATGTTAAAAACCTGTCAGACACAATAACGGATGCTGAGTTGCAGAATATTTTCGGAGAATATGGTGATATTACAAGTGCTGTAGTGATGAGACATACAGATGGTAGATCAAAAGGTTTTGGTTTTGTGAATTTTGCAAATGCAGACAATGCTGCTAGAGCTCGGGACGGTCTTGATGGACAGATCTATCATGGTAAGACTTGGTGTGTTAGAAGAGCCCAGAAAAAAACTGAAAGGGAGCGTGAACTGACAGAGCAATATGACCAGAATAGGGGGATTTTCTCTCGTAGGCAAGGTAGAAACTTGTATATAAAGAACTTGGACGGTAGGATTGATGATGACACTCTTAAGAAAATTTTCTGTGAGTTTGGTATAATAATCTCAGCCAAGGTTATGAGAGATGCAAATGGAAGAAGTAAAGGAGTTGGATTTGTTGCATACTCAAGTCGGGAGGCAGCAAATCAGGCTATTGTGTTGATGCATGGTCGAGTAGTTGCAGGAAAATCTCTATATGTTGCCTTTGCACAGAAAAGGGCAGAGAGAAGAGCAATGTTAGAGGCACATTTTTCACAAAATAGGGCTGCTCCACCAGCACCTTTTCCTGAACCTCAATTTCCAATGTATCCTATACGGGCTCCTGCGCTAGGATCACGAAATTTAAATAGCCAAACACATCAAACTTTAATATCACAAGAAGAACTTGATTACCACCTGCAGAATCTTCCTCGCTTAGAGATGGCAACTGGTCCTCCATTTTCATTCTTAATGCCTCAGCGTGGACCCCCGCGGCCAAGAGGACACCGACCACCAGGTCTTGGGCAACCGCTCGCGTCACACCAGCAGGTCTTATTCCGTATTCCTTTGGTCATTGCATTGTATTTTCCATTCTCTACTTCTGATGTGGATACTTGTTACTGTGGATTTCAGATGATTCCACGGGGANGTAATTTCTTTACTTAA 1554 0.4324 MAQVPDNDSSEETNSRFHTALYVGDLDETIDESQLFIIFDHVAKVLSVRICRDYATGKSLGYAYVNYSSRYNAAKAIKELNFIPVNGKTIRVTYSNRDPSVRKSGRANLYVKNLAPSIYHKALYDLCSSFGNILSCTVATDASGQSKGYGFVQFESEASAGEAIEKLNGTLLKDKKIYMGPFVSKQDRVNSDANFSNVYVKNLSDTITDAELQNIFGEYGDITSAVVMRHTDGRSKGFGFVNFANADNAARARDGLDGQIYHGKTWCVRRAQKKTERERELTEQYDQNRGIFSRRQGRNLYIKNLDGRIDDDTLKKIFCEFGIIISAKVMRDANGRSKGVGFVAYSSREAANQAIVLMHGRVVAGKSLYVAFAQKRAERRAMLEAHFSQNRAAPPAPFPEPQFPMYPIRAPALGSRNLNSQTHQTLISQEELDYHLQNLPRLEMATGPPFSFLMPQRGPPRPRGHRPPGLGQPLASHQQVLFRIPLVIALYFPFSTSDVDTCYCGFQMIPRGXNFFT 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7427g00002 517 Gene3D - 98 190 IPR012677 -
Vium7427g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 184 IPR000504 GO:0003723
Vium7427g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 97 IPR000504 GO:0003723
Vium7427g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 300 368 IPR000504 GO:0003723
Vium7427g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 198 266 IPR000504 GO:0003723
Vium7427g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 177 IPR000504 GO:0003723
Vium7427g00002 517 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 91 IPR000504 GO:0003723
Vium7427g00002 517 SUPERFAMILY RNA-binding domain, RBD 196 378 IPR035979 GO:0003676
Vium7427g00002 517 CDD RRM2_I_PABPs 105 181 IPR045305 -
Vium7427g00002 517 Gene3D - 3 97 IPR012677 -
Vium7427g00002 517 Gene3D - 191 286 IPR012677 -
Vium7427g00002 517 PANTHER RNA BINDING PROTEIN 290 419 - -
Vium7427g00002 517 SMART rrm1_1 108 180 IPR000504 GO:0003723
Vium7427g00002 517 SMART rrm1_1 197 269 IPR000504 GO:0003723
Vium7427g00002 517 SMART rrm1_1 299 371 IPR000504 GO:0003723
Vium7427g00002 517 SMART rrm1_1 20 93 IPR000504 GO:0003723
Vium7427g00002 517 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 20 440 IPR006515 GO:0003723
Vium7427g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 298 375 IPR000504 GO:0003723
Vium7427g00002 517 FunFam Poly(A) binding protein cytoplasmic 1 like 291 379 - -
Vium7427g00002 517 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 196 273 IPR000504 GO:0003723
Vium7427g00002 517 MobiDBLite consensus disorder prediction 450 472 - -
Vium7427g00002 517 MobiDBLite consensus disorder prediction 453 467 - -
Vium7427g00002 517 SUPERFAMILY RNA-binding domain, RBD 19 186 IPR035979 GO:0003676
Vium7427g00002 517 Gene3D - 287 388 IPR012677 -
Vium7427g00002 517 FunFam Polyadenylate-binding protein 101 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7427g00002 Vium-Chr7427 9231 11602 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7427g00002 9 455 Eukaryotic Initiation Factors Gene Family AT4G34110 52.539 5.48e-159 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7427g00002 K13126 - gmx:100799386 450.669