Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7422g00001 ATGCCTTTCAAGAGGTACGTTGAGATCGGGAGGGTTGCTCTCGTCAACTACGGCAAGGAATATGGGAGGCTCGTCGTCATCGTCGACGTCATTGACCAGAACAGAGCACTTGTCGATGCCCCTGATATGGTGAGAACTCAAGTCAATTTCAAGAGGCTTTCCCTAACCGATATTAAGATTGACATTAAGAGGGTCCCCAAGAAGAAAGATCTTGTTAAAGCCATGGAGGCTGCTGATGTTAAGAACAAATGGGAAAACAGCTCATGGGGCAGGAAACTCATTGTCAAAAAGAGAAGGGCAGCCCTCACTGACTTCGACAGGTTCAAGCTAATGTTGGCCAAGATCAAGAGGGCAGCTGTTGTAAGGCAAGAAATCTCTAAGCTGAAAAAGAGCGCGTAG 399 0.4712 MPFKRYVEIGRVALVNYGKEYGRLVVIVDVIDQNRALVDAPDMVRTQVNFKRLSLTDIKIDIKRVPKKKDLVKAMEAADVKNKWENSSWGRKLIVKKRRAALTDFDRFKLMLAKIKRAAVVRQEISKLKKSA 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7422g00001 132 Pfam Ribosomal protein L14 45 117 IPR002784 GO:0003735|GO:0005840|GO:0006412
Vium7422g00001 132 PANTHER 60S RIBOSOMAL PROTEIN L14 1 131 IPR039660 GO:0003723|GO:0003735
Vium7422g00001 132 SUPERFAMILY Translation proteins SH3-like domain 5 93 IPR008991 -
Vium7422g00001 132 FunFam 60S ribosomal protein L14-1 1 84 - -
Vium7422g00001 132 Gene3D - 1 84 IPR014722 -
Vium7422g00001 132 Gene3D - 92 127 - -
Vium7422g00001 132 CDD KOW_RPL14 7 79 IPR041985 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7422g00001 Vium-Chr7422 1834 2942 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7422g00001 1 131 Cytoplasmic Ribosomal Protein Gene Family AT4G27090 80.916 6.59e-74 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7422g00001 K02875 - gmx:100499889 240.736