Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7420g00003 ATGCTCAACTCAAGAATTTCCTCTGGCTTTTTTCATTTCATAATGGAGACGAGTAAAAAGGGCCAATGGTTAAGTGTTCTGATATGTGTGGTACTATTACTAAAGGCAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCACTTCCATAAGGGATCTGGAGCAGGGATTAACAACTGGATTGTTCACTTTGAGGGAGGAGGATGGTGCAACAACGTTACTTCTTGCCTTTCTCGTAGGGACACTCGATTAGGCTCGTCTAAAAAAATGGATACCCAACTTTCCTTTTCTGGATTTTTTAGTAACAGTAAAAAGTTCAATCCAGATTTCTACGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCGAGCAACCAATTTGCACTTAAGAGGAGCAAGGGTTTTTGCTGCTGTTGTTGATGATTTACTAGCAAAAGGAATGAAAAATGCTCAAAATGCAATTATCTCTGGATGTTCTGCTGGAGGGTTGGCTGCAATTTTAAACTGTGATCGATTCAAATCACTACTACCAGGAACGACTAAAGTGAAATGCCTTGCAGATGCTGGTTATTTTATCAATGTAAAGGATGTCTCTGGCGCACAGCGCATTGAAGAGTTCTACAATCAAGTTGTCCAAACACATGGCTCAGCTAAGAATTTGCCTGCATCCTGCACTTCAAGACTCAGACCAGGGCTGTGCTTTTTCCCACAAAATGTGGTATCACAAATCAGTACGCCAATCTTCTTCGTAAATGCAGCTTATGATTCATGGCAGATCAAAAACATTTTGGCACCAGGTGCTGCAGATCCCCATGGCACCTGGCGTGAATGCAAGCTTGATATAAAAAAATGCTCATCAAATCAACTCAGTGTAATGCAAGTATTCAGGACTGATTTCCTGAGGGCATTTGGTGCTGTTGGGAACTCTCCATCAAAAGGGCATTTCATAGATGGTTGCTATGCTCACTGCCAAACTGGAACACAAGAGACATGGATGAGAAATGACTCTCCTGTGTTAGGCAGCACAACAATTGCGAAGGCAGTTGGAGACTGGTATTATGATCGAAAGCCATTTAAGCAGATAGATTGTGCCTACCCTTGCAACCCCACTTGCCACAATCGTATTTTTGATCAGAATGAGCGTCCAGACGTATAG 1242 0.4235 MLNSRISSGFFHFIMETSKKGQWLSVLICVVLLLKAEGVPVGITFVENAVAKGAVCLDGSPPAYHFHKGSGAGINNWIVHFEGGGWCNNVTSCLSRRDTRLGSSKKMDTQLSFSGFFSNSKKFNPDFYDWNRIKVRYCDGSSFTGDVEAVDRATNLHLRGARVFAAVVDDLLAKGMKNAQNAIISGCSAGGLAAILNCDRFKSLLPGTTKVKCLADAGYFINVKDVSGAQRIEEFYNQVVQTHGSAKNLPASCTSRLRPGLCFFPQNVVSQISTPIFFVNAAYDSWQIKNILAPGAADPHGTWRECKLDIKKCSSNQLSVMQVFRTDFLRAFGAVGNSPSKGHFIDGCYAHCQTGTQETWMRNDSPVLGSTTIAKAVGDWYYDRKPFKQIDCAYPCNPTCHNRIFDQNERPDV 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7420g00003 413 PANTHER NOTUM-RELATED 26 402 IPR004963 GO:0016787
Vium7420g00003 413 Pfam Pectinacetylesterase 35 386 IPR004963 GO:0016787
Vium7420g00003 413 SUPERFAMILY alpha/beta-Hydrolases 157 286 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7420g00003 Vium-Chr7420 376 4492 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7420g00003 19 413 Carbohydrate Esterase AT4G19420 59.535 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7420g00003 K19882 - gmx:100781246 761.14