Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7420g00001 ATGGAGACGAGTAAAAAGGGCCAATGGTTAAGTGTTCTGATATGTGTGGTACTATTACTAAAGGCAGAAGGGGTTCCTGTGGGAATCACTTTTGTTGAAAATGCAGTGGCAAAAGGAGCTGTTTGTTTGGATGGGAGTCCACCAGCTTACCACTTCCATAAGGGATCTGGAGCAGGGATTAACAACTGGATTGTTCACTTTGAGGGAGGAGGATGGTGCAACAACGTTACTTCTTGCCTTTCTCGTAGGGACACTCGATTAGGCTCGTCTAAAAAAATGGATACCCAACTTTCCTTTTCTGGATTTTTTAGTAACAGTAAAAAGTTCAATCCAGATTTCTACGATTGGAACAGAATCAAGGTTAGGTATTGTGATGGGTCATCATTTACTGGTGATGTTGAAGCTGTTGATCGAGCAACCAATTTGCACTTAAGAGGAGCAAGGGTTTTTGCTGCTGTTGTTGATGATTTACTAGCAAAAGGAATGAAAAATGCTCAAAATGCAATTATCTCTGGATGTTCTGCTGGAGGGTTGGCTGCAATTTTAAACTGTGATCGATTCAAATCACTACTACCAGGAACGACTAAAGTGAAATGCCTTGCAGATGCTGGTTATTTTATCAATGTAAAGGATGTCTCTGGCGCACAGCGCATTGAAGAGTTCTACAATCAAGTTGTCCAAACACATGGCTCAGCTAAGAATTTGCCTGCATCCTGCACTTCAAGACTCAGACCAGGGCTGTGCTTTTTCCCACAAAATGTGGTATCACAAATCAGTACGCCAATCTTCTTCGTAAATGCAGCTTATGATTCATGGCAGATCAAAAACATTTTGGCACCAGGTGCTGCAGATCCCCATGGCACCTGGCGTGAATGCAAGCTTGATATAAAAAAATGCTCATCAAATCAACTCAGTGTAATGCAAGTATTCAGGACTGATTTCCTGAGGGCATTTGGTGCTGTTGGGAACTCTCCATCAAAAGGGCATTTCATAGATGGTTGCTATGCTCACTGCCAAACTGGAACACAAGAGACATGGATGAGAAATGACTCTCCTGTGTTAGGCAGCACAACAATTGCGAAGGCAGTTGGAGACTGGTATTATGATCGAAAGCCATTTAAGCAGATAGATTGTGCCTACCCTTGCAACCCCACTTGCCACAATCGTATTTTTGATCAGAATGAGCGTCCAGACGTATAG 1200 0.4267 METSKKGQWLSVLICVVLLLKAEGVPVGITFVENAVAKGAVCLDGSPPAYHFHKGSGAGINNWIVHFEGGGWCNNVTSCLSRRDTRLGSSKKMDTQLSFSGFFSNSKKFNPDFYDWNRIKVRYCDGSSFTGDVEAVDRATNLHLRGARVFAAVVDDLLAKGMKNAQNAIISGCSAGGLAAILNCDRFKSLLPGTTKVKCLADAGYFINVKDVSGAQRIEEFYNQVVQTHGSAKNLPASCTSRLRPGLCFFPQNVVSQISTPIFFVNAAYDSWQIKNILAPGAADPHGTWRECKLDIKKCSSNQLSVMQVFRTDFLRAFGAVGNSPSKGHFIDGCYAHCQTGTQETWMRNDSPVLGSTTIAKAVGDWYYDRKPFKQIDCAYPCNPTCHNRIFDQNERPDV 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7420g00001 399 PANTHER NOTUM-RELATED 12 388 IPR004963 GO:0016787
Vium7420g00001 399 Pfam Pectinacetylesterase 21 372 IPR004963 GO:0016787
Vium7420g00001 399 SUPERFAMILY alpha/beta-Hydrolases 143 272 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7420g00001 Vium-Chr7420 376 5234 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7420g00001 5 399 Carbohydrate Esterase AT4G19420 59.535 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7420g00001 K19882 - gmx:100781246 761.14