Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7416g00002 ATGGGATCTTGCCTCTCCGTCGCGGGGGCACCATCGGATGCATGTGATGACCGCTTGTGGAGTCCAACCGAATTGTCGGATCATAGGATTGAAATGCGGGTTCACAGAGTTCCTGGGAGATTGTTCTTGAACGGTTCATCGCAGATTGCTTCCTTGTACTGCAGAAAAGGCTACGGAGGGATCAACCAGGATGCAATGCTTGTTTGGGAGAACTTCTGTTCGAACGACGGCACCGTTTTATGCGGTGTCTTCGATGGCCACGGACCTTATGGCCATTTGGTTGCAAAGAAACTCAGGGATTCCTTTCCTTTAAAGCTCATGGCTCAGTGGAATTCCTCAAATCCTGACAGCACCTACAGTTATCGCAATTTCTTTAACACATCCATGAACAACGACTTTGAACCTTGTACCATTGCCCCAACTGAAATTGCGACGCTCAGACAATCTTTTATCAGAGCTTCGAAGATCATGGACAGAGACCTCAGAATTCACAATCAGATCGATTGCTCCTCTAGTGGCTCCACGGCTGTTACCTTGCTCAAGCAGGGCCACGACCTTCTTATTGCTAATGTGGGTGACTCCAGAGCTGTATTGGCTACTCATGACCGCAATGGTTCCCTTATTGCCATTCAGCTGACCACTGACCTTAAGCCTGATCTTCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAGGGAAGAGTGTTCGCCCTTCAAAATGAACCGGGGATTTATAGATTATGGCTTCCCAATGTTGACTCCCCCGGGCTTGCCATGTCAAGATCTTTTGGAGATTTTTGTCTCAAGGACTTTGGACTCATCTCTGTTCCTGATCTCTCTTATCACCGCCTCAATCACAGGGATCAATTTGTTGTGTTAGCCACAGATGGGGTATGTGATGTTTTATCAAACGAAGAAGTTGTGTCCATTGTGTCGTCTAGTCCACGCTCTTCAGCGGCTCGAATACTGGTTGACGCAGCTGTTCAGGCATGGAAAACCAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAGTTTGCCTCTTCCTTAATTCCATGTCGGAGTTAAAACCATCGACCCCCAAAAAAGACCCATCAAATGTCGTTGAGCAGTAA 1113 0.4726 MGSCLSVAGAPSDACDDRLWSPTELSDHRIEMRVHRVPGRLFLNGSSQIASLYCRKGYGGINQDAMLVWENFCSNDGTVLCGVFDGHGPYGHLVAKKLRDSFPLKLMAQWNSSNPDSTYSYRNFFNTSMNNDFEPCTIAPTEIATLRQSFIRASKIMDRDLRIHNQIDCSSSGSTAVTLLKQGHDLLIANVGDSRAVLATHDRNGSLIAIQLTTDLKPDLPREAERIRICKGRVFALQNEPGIYRLWLPNVDSPGLAMSRSFGDFCLKDFGLISVPDLSYHRLNHRDQFVVLATDGVCDVLSNEEVVSIVSSSPRSSAARILVDAAVQAWKTKLPTSKVDDCSVVCLFLNSMSELKPSTPKKDPSNVVEQ 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7416g00002 370 SUPERFAMILY PP2C-like 46 351 IPR036457 -
Vium7416g00002 370 Gene3D - 45 352 IPR036457 -
Vium7416g00002 370 ProSiteProfiles PPM-type phosphatase domain profile. 46 349 IPR001932 -
Vium7416g00002 370 SMART PP2C_4 40 347 IPR001932 -
Vium7416g00002 370 PANTHER PROTEIN PHOSPHATASE 58 347 IPR015655 GO:0004722|GO:0006470
Vium7416g00002 370 Pfam Protein phosphatase 2C 126 323 IPR001932 -
Vium7416g00002 370 CDD PP2Cc 48 349 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7416g00002 Vium-Chr7416 2818 4855 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7416g00002 18 353 PP2C-type Phosphatase Gene Family AT1G16220 54.023 1.23e-134 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7416g00002 - - gmx:100816114 480.715