Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7416g00001 ATGGGATCTTGCCTCTCCGTCGCGGGGGCACCATCGGATGCATGTGATGACCGCTTGTGGAGTCCAACCGAATTGTCGGATCATAGGATTGAAATGCGGGTTCACAGAGTTCCTGGGAGATTGTTCTTGAACGGTTCATCGCAGATTGCTTCCTTGTACTGCAGAAAAGGCTACGGAGGGATCAACCAGGATGCAATGCTTGTTTGGGAGAACTTCTGTTCGAACGACGGCACCGTTTTATGCGGTGTCTTCGATGGCCACGGACCTTATGGCCATTTGGTTGCAAAGAAACTCAGGGATTCCTTTCCTTTAAAGCTCATGGCTCAGTGGAATTCCTCAAATCCTGACAGCACCTACAGTTATCGCAATTTCTTTAACACATCCATGAACAACGACTTTGAACCTTGTACCATTGCCCCAACTGAAATTGCGACGCTCAGACAATCTTTTATCAGAGCTTCGAAGATCATGGACAGAGACCTCAGAATTCACAATCAGATCGATTGCTCCTCTAGTGGCTCCACGGCTGTTACCTTGCTCAAGCAGGGCCACGACCTTCTTATTGCTAATGTGGGTGACTCCAGAGCTGTATTGGCTACTCATGACCGCAATGGTTCCCTTATTGCCATTCAGCTGACCACTGACCTTAAGCCTGATCTTCCAAGGGAAGCAGAGAGGATAAGGATTTGTAAGGGAAGAGTGTTCGCCCTTCAAAATGAACCGGGGATTTATAGATTATGGCTTCCCAATGTTGACTCCCCCGGGCTTGCCATGTCAAGATCTTTTGGAGATTTTTGTCTCAAGGACTTTGGACTCATCTCTGTTCCTGATCTCTCTTATCACCGCCTCAATCACAGGGATCAATTTGTTGTGTTAGCCACAGATGGGGTAACGCTTACCTCCTTTTTTCTTTTGTCAAACACAAATATATATGATCCACATTCTTGTGTTATCATGCACATACTTTCAAATCTCTTTAGGTATGTGATGTTTTATCAAACGAAGAAGTTGTGTCCATTGTGTCGTCTAGTCCACGCTCTTCAGCGGCTCGAATACTGGTTGACGCAGCTGTTCAGGCATGGAAAACCAAGCTTCCCACTTCTAAGGTTGATGATTGCTCTGTAG 1125 0.4631 MGSCLSVAGAPSDACDDRLWSPTELSDHRIEMRVHRVPGRLFLNGSSQIASLYCRKGYGGINQDAMLVWENFCSNDGTVLCGVFDGHGPYGHLVAKKLRDSFPLKLMAQWNSSNPDSTYSYRNFFNTSMNNDFEPCTIAPTEIATLRQSFIRASKIMDRDLRIHNQIDCSSSGSTAVTLLKQGHDLLIANVGDSRAVLATHDRNGSLIAIQLTTDLKPDLPREAERIRICKGRVFALQNEPGIYRLWLPNVDSPGLAMSRSFGDFCLKDFGLISVPDLSYHRLNHRDQFVVLATDGVTLTSFFLLSNTNIYDPHSCVIMHILSNLFRYVMFYQTKKLCPLCRLVHALQRLEYWLTQLFRHGKPSFPLLRLMIAL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7416g00001 374 Gene3D - 45 312 IPR036457 -
Vium7416g00001 374 CDD PP2Cc 48 312 IPR001932 -
Vium7416g00001 374 SUPERFAMILY PP2C-like 46 298 IPR036457 -
Vium7416g00001 374 Pfam Protein phosphatase 2C 126 298 IPR001932 -
Vium7416g00001 374 ProSiteProfiles PPM-type phosphatase domain profile. 46 374 IPR001932 -
Vium7416g00001 374 PANTHER PROTEIN PHOSPHATASE 58 298 IPR015655 GO:0004722|GO:0006470
Vium7416g00001 374 SMART PP2C_4 40 319 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7416g00001 Vium-Chr7416 2818 4855 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7416g00001 18 312 PP2C-type Phosphatase Gene Family AT1G16220 50.980 1.51e-108 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7416g00001 - - gmx:100816114 416.772