Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7412g00001 ATGAATCTGCTCCACGGCTCCAAGGTTTGGGTCGAGGACCGGGATTCTGCCTGGCTGCCAGCTGAAGTGCTCGATTCCGACGGTAACAAGATTCTGCTACTAACTGATTCCGGCAAGAAGGTGTTTGCTTCCAAGGAGAAACTGTTCCCGAGGGATGCTGACGAAGAGGAGCATGGTGGATTCGAAGACATGACGCGGTTGGCGTACCTGAACGAGCCTGGAGTTATGTTCAATCTTCGAAGAAGATACGCGTTCAATGATATCTATACATATACAGGCAGCATTTTAATAGCCGTTAATCCGTTCACAAAGCTTCCACATTTATATGATTCCCATATGATGGAGCAATATAAGGGAGCTCCATTGGGTGAGCTTAGCCCACATGTTTTTGCTGTCGCTGATGCATCATACAGAGCAATGATGAATGAAGGTAAAAGTCAATCTATCTTGGTTAGCGGCGAAAGTGGTGCTGGAAAAACTGAGACAACAAAATTGATCATGCAGTATCTTACCTTTGTTGGTGGACGTGCTGCTGGTGATGATAGAACAGTTGAACAACAAGTTCTTGAATCCAATCCACTTTTAGAGGCGTTTGGTAATGCAAGAACTGTTAGGAATGACAATTCGAGTCGTTTTGGGAAGTTTGTTGAAATTCAGTTTGATTCAAATGGTAGAATATCTGGTGCTGCAATTAGAACTTACTTACTGGAAAGATCACGAGTAGTGCAGATAACGGATCCAGAGAGAAATTATCACTGCTTTTATCAGTTGTGTTCATTTGAAAGGGATGCAGAGAAGTATAAGTTAGGACATCCGAGTCACTTCCACTATCTAAATCAAAGTAAAATCTATGAATTAGATGGTGTAAGCAACTCAGAAGAATATCTCAAGACAAGGAGGGCAATGGATATTGTTGGCATTAGTCACCAGGATCAGGAAGCCATATTTCGTGTCTTAGCAGCAATTTTACATTTGGGAAACATTGAATTTTCTCCTGGAAAAGAGCATGATTCATCGGCAGTAAAGAATGACAAATCAAGATTTCATATGCAGATGGCTTCTGATCTTTTCATGTGTGATGTAGACCTACTGTTGGCAACATTGTGTACTCGTTCAATACAAACTCTTGAAGGAAGTATTGTCAAGGCCCTTGATTGCAATGCTGCTGTTGCTGGCCGTGATGCTTTGGCGAAAACTGTTTACGCTCGTTTATTTGATTGGCTTGTTGATAAGATCAATATGTCTGTTGGGCAAGACATCAATTCCAAGATACAGATTGGAGTTTTGGATATTTATGGTTTTGAGTGCTTTAAGGATAATAGTTTTGAGCAATTTTGCATCAATTTTGCAAACGAAAAGCTTCAGCAACATTTTAATGAGCATGTGTTCAAGATGGAACAGGATGAGTATGGCAAAGAAGAAATTAACTGGAGTTACATTGAATTTGTAGATAACAAAGATGTTTTAGATTTAATTGAAAAGAAACCCATTGGTATCATTGCTCTGTTGGATGAAGCTTGTATGTTTCCAAAGTCGACTCATGAAACATTCTCAACCAAGTTGTTTCAGCATTTCCGATCTCACCCTAGGTTGGGAAAGGAAAAGTTTTCACAAACCGATTTTACTATTTCTCATTATGCTGGAAAGGTGAGTACTAGTTACTGGACTTTCTCCTGATTCAGACACAAGTGACATTTCCAATGTTTAAGGAGATCGTCTACTGTTTTTATGTAGGTCACGTATCATACAGATACATTTTTAGACAAAAATCGGGATTATGTTGTAGTAGAACATTGCAATCTCTTATCTTCTTCAAAATGCCCTTTCGTTTCTGGTCTATTTCCTTTGCTATCTGAAGAATCTTCAAGATCATCATACAAGTTTTCTTCTGTAGCTGCTAGATTTAAGCAACAACTTCAAGCACTCATGAAGACCCTAAACTCAACAGAGCCTCACTACATACGATGTGTGAAACCAAATTCTTCGAATCGACCACAACAATTTGAAAATGCAAGTGTCATACACCAGTTACGCTGTGGGGGTGTCCTTGAGGCTGTTCGGATAAGTCTGGCAGGTTATCCCACTCGAAGAACTTACTCAGAGTTTGTGGATCGTTTTGGGTTGATAGCTTCTGAATTTATGGATGGAAGGTGA 2154 0.3993 MNLLHGSKVWVEDRDSAWLPAEVLDSDGNKILLLTDSGKKVFASKEKLFPRDADEEEHGGFEDMTRLAYLNEPGVMFNLRRRYAFNDIYTYTGSILIAVNPFTKLPHLYDSHMMEQYKGAPLGELSPHVFAVADASYRAMMNEGKSQSILVSGESGAGKTETTKLIMQYLTFVGGRAAGDDRTVEQQVLESNPLLEAFGNARTVRNDNSSRFGKFVEIQFDSNGRISGAAIRTYLLERSRVVQITDPERNYHCFYQLCSFERDAEKYKLGHPSHFHYLNQSKIYELDGVSNSEEYLKTRRAMDIVGISHQDQEAIFRVLAAILHLGNIEFSPGKEHDSSAVKNDKSRFHMQMASDLFMCDVDLLLATLCTRSIQTLEGSIVKALDCNAAVAGRDALAKTVYARLFDWLVDKINMSVGQDINSKIQIGVLDIYGFECFKDNSFEQFCINFANEKLQQHFNEHVFKMEQDEYGKEEINWSYIEFVDNKDVLDLIEKKPIGIIALLDEACMFPKSTHETFSTKLFQHFRSHPRLGKEKFSQTDFTISHYAGKVSTSYWTFSXFRHKXHFQCLRRSSTVFMXVTYHTDTFLDKNRDYVVVEHCNLLSSSKCPFVSGLFPLLSEESSRSSYKFSSVAARFKQQLQALMKTLNSTEPHYIRCVKPNSSNRPQQFENASVIHQLRCGGVLEAVRISLAGYPTRRTYSEFVDRFGLIASEFMDGR 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7412g00001 717 PRINTS Myosin heavy chain signature 146 171 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 PRINTS Myosin heavy chain signature 193 220 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 PRINTS Myosin heavy chain signature 478 506 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 PRINTS Myosin heavy chain signature 425 453 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 PRINTS Myosin heavy chain signature 89 108 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 Gene3D Kinesin motor domain 650 692 IPR036961 -
Vium7412g00001 717 PANTHER MYOSIN 51 712 - -
Vium7412g00001 717 Gene3D Kinesin motor domain 60 436 IPR036961 -
Vium7412g00001 717 FunFam Myosin heavy chain 249 303 - -
Vium7412g00001 717 CDD MYSc_Myo11 73 716 IPR036018 -
Vium7412g00001 717 Gene3D - 249 303 - -
Vium7412g00001 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 714 IPR027417 -
Vium7412g00001 717 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 4 53 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 Gene3D - 578 649 - -
Vium7412g00001 717 Gene3D - 437 553 - -
Vium7412g00001 717 ProSiteProfiles Myosin motor domain profile. 59 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 Gene3D Myosin VI head, motor domain, U50 subdomain 304 415 - -
Vium7412g00001 717 SMART MYSc_2a 53 717 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 Pfam Myosin head (motor domain) 578 712 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vium7412g00001 717 Pfam Myosin head (motor domain) 62 554 IPR001609 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7412g00001 Vium-Chr7412 330 24063 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7412g00001 1 715 Myosins gene family AT4G33200 76.503 0.0 1141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7412g00001 K10357 - vum:124845124 1427.92