Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7410g00004 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAACATGGTTATGGACATGATGGTGGTAGTGGTGGCTCAGCAGGCTTCAATTTTAACCAAGGGATGCTGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGAACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCACCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACAGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAAGTTCAATTGAAACATGATCTCCTCTGTCTCTGTCTCTCTCTCTCTCTCTCTAGACTGACACCGACAGCATTTGCAAAAGAGACTGCAATAAGATGTTAA 1095 0.4804 MSLLTVAYQRGSGEFIRFTADDGGEGEHGYGHDGGSGGSAGFNFNQGMLQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFAHAPSLSRLSSFSSSPSPSSGPSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTLADFMLPSQGDSSSVTEEAPTSTTTTVTAAATAVTAVTETTTGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQPTTRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQVQLKHDLLCLCLSLSLSRLTPTAFAKETAIRC 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7410g00004 364 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Vium7410g00004 364 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
Vium7410g00004 364 MobiDBLite consensus disorder prediction 113 131 - -
Vium7410g00004 364 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Vium7410g00004 364 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Vium7410g00004 364 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vium7410g00004 364 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
Vium7410g00004 364 PANTHER DNA-BINDING DOMAIN 153 292 IPR044808 GO:0003700|GO:0009873
Vium7410g00004 364 MobiDBLite consensus disorder prediction 113 155 - -
Vium7410g00004 364 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Vium7410g00004 364 FunFam Ethylene-responsive transcription factor 2 213 272 - -
Vium7410g00004 364 CDD AP2 214 273 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7410g00004 Vium-Chr7410 46958 49948 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7410g00004 211 278 AP2-EREBP Transcription Factor Family AT2G33710 77.941 1.91e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7410g00004 AP2 2.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7410g00004 - - vum:124845121 585.489