Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7410g00003 ATGTCCTTGCTAACGGTGGCGTACCAAAGGGGCTCAGGTGAGTTTATCCGGTTCACCGCGGATGACGGTGGTGAGGGTGAACATGGTTATGGACATGATGGTGGTAGTGGTGGCTCAGCAGGCTTCAATTTTAACCAAGGGATGCTGCAACAACAAGGTGAGGTAACAATGCAAGGTGGTTCTTTGGTTTCAGGGTACAACAGGGGTGATCCAGAGTTGAGGCAAATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGTACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCACCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACAGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCATCAGCATCAGCTTCAACAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTGTTACCATCATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCAGCAGGCCGGAGATGCCGCCGTCAACATGGTCCGATACCGGTGGCAACCCGCCACCTTCCGGTTGA 1353 0.4826 MSLLTVAYQRGSGEFIRFTADDGGEGEHGYGHDGGSGGSAGFNFNQGMLQQQGEVTMQGGSLVSGYNRGDPELRQMVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFAHAPSLSRLSSFSSSPSPSSGPSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTLADFMLPSQGDSSSVTEEAPTSTTTTVTAAATAVTAVTETTTGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQPTTRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQHQHQLQQQQQPQPSSLLQQFYYNAQLASLQSPSLLPSSPSFSSSVSQTPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGSRPEMPPSTWSDTGGNPPPSG 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7410g00003 450 PANTHER DNA-BINDING DOMAIN 155 354 IPR044808 GO:0003700|GO:0009873
Vium7410g00003 450 Pfam AP2 domain 214 263 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 ProSiteProfiles AP2/ERF domain profile. 214 271 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 MobiDBLite consensus disorder prediction 419 450 - -
Vium7410g00003 450 MobiDBLite consensus disorder prediction 113 131 - -
Vium7410g00003 450 CDD AP2 214 273 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 Gene3D AP2/ERF domain 213 273 IPR036955 GO:0003700|GO:0006355
Vium7410g00003 450 MobiDBLite consensus disorder prediction 435 450 - -
Vium7410g00003 450 PRINTS Ethylene responsive element binding protein signature 237 253 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 PRINTS Ethylene responsive element binding protein signature 215 226 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 SUPERFAMILY DNA-binding domain 214 272 IPR016177 GO:0003677
Vium7410g00003 450 MobiDBLite consensus disorder prediction 113 155 - -
Vium7410g00003 450 SMART rav1_2 214 277 IPR001471 GO:0003700|GO:0006355
Vium7410g00003 450 FunFam Ethylene-responsive transcription factor 2 213 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7410g00003 Vium-Chr7410 44346 46731 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7410g00003 211 278 AP2-EREBP Transcription Factor Family AT2G33710 77.941 4.61e-33 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Vium7410g00003 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7410g00003 - - vun:114180418 585.489