Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7410g00002 ATGGTTTCAGCTTTGACACATGTTGTTTCGTCAGGGTCTGACCAGAGGAGCACCGAATGGATGCAACAAAGTGGTTATCCTATGATGTCAGGTTTCGCACATGCACCTTCTCTTTCTCGTTTGTCTTCTTTCTCTTCCTCTCCTTCTCCTTCTTCTGGACCCTCTGGTGTTGGTCAGAAAAGAGGGAGAGAAGAACAAGAGACTAATACCTCTTCTTCACATAACCTGATGCAACAACAAACTGCTCCCAGACTCTTCAGAACAACACTTGCTGACTTCATGCTACCTTCTCAAGGAGACTCATCTTCAGTGACTGAAGAAGCTCCCACCTCCACAACTACAACAGTAACAGCAGCAGCAACTGCTGTTACTGCTGTTACTGAAACTACGACTGGAGATGGGGAAAGGAGGAGAAAGTACAGAGGAGTGAGACAGAGGCCATGGGGGAAATGGGCAGCTGAAATCCGTGATCCACACAAAGCCGCAAGAGTTTGGCTTGGTACATTTGACACAGAAGAAGCAGCAGCAAGAGCCTATGATGAAGCTGCATTGAGGTTCAGAGGCAACAGGGCAAAGCTAAACTTCCCTGAAAATGTTAGGGCAGTTCCCCCTATTCAACCTTTCCAACCCACCACAAGACTAACCGTTTCTGACTCCTCCACCACTCAATTCCGACCACTCACCACAGCCATGGCGGCGCCACCCTTCATTCAGCCGCCAAATATGCAAAGCTCCTCTGACTTGATCAGAGACTATTTGCAATACTCTCAGCTTCTACAGAGTGATTTTCAACAGCAGCATCATCAGCATCAGCATCAGCTTCAACAACAACAACAACCACAACCTTCTAGTTTGCTTCAGCAGTTCTACTACAATGCACAATTGGCTTCTCTTCAATCACCTTCATTGTTACCATCATCACCTTCATTCTCTTCTTCTGTGTCACAAACTCCATTCCCGTTATTCTCAACATCTCCTCAATTTTCCTCTGCTTCATTTCCCATGTTTTCAAGTCAACAAATGAGTTATTTCCAGCCACTGGAAAGCCTCCCTCCAGCCGGCAGCAGGCCGGAGATGCCGCCGTCAACATGGTCCGATACCGGTGGCAACCCGCCACCTTCCGGTTGA 1128 0.477 MVSALTHVVSSGSDQRSTEWMQQSGYPMMSGFAHAPSLSRLSSFSSSPSPSSGPSGVGQKRGREEQETNTSSSHNLMQQQTAPRLFRTTLADFMLPSQGDSSSVTEEAPTSTTTTVTAAATAVTAVTETTTGDGERRRKYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTEEAAARAYDEAALRFRGNRAKLNFPENVRAVPPIQPFQPTTRLTVSDSSTTQFRPLTTAMAAPPFIQPPNMQSSSDLIRDYLQYSQLLQSDFQQQHHQHQHQLQQQQQPQPSSLLQQFYYNAQLASLQSPSLLPSSPSFSSSVSQTPFPLFSTSPQFSSASFPMFSSQQMSYFQPLESLPPAGSRPEMPPSTWSDTGGNPPPSG 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7410g00002 375 SUPERFAMILY DNA-binding domain 139 197 IPR016177 GO:0003677
Vium7410g00002 375 MobiDBLite consensus disorder prediction 1 20 - -
Vium7410g00002 375 CDD AP2 139 198 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 PANTHER DNA-BINDING DOMAIN 80 279 IPR044808 GO:0003700|GO:0009873
Vium7410g00002 375 MobiDBLite consensus disorder prediction 344 375 - -
Vium7410g00002 375 MobiDBLite consensus disorder prediction 28 80 - -
Vium7410g00002 375 MobiDBLite consensus disorder prediction 36 56 - -
Vium7410g00002 375 FunFam Ethylene-responsive transcription factor 2 138 197 - -
Vium7410g00002 375 SMART rav1_2 139 202 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 PRINTS Ethylene responsive element binding protein signature 162 178 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 PRINTS Ethylene responsive element binding protein signature 140 151 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 ProSiteProfiles AP2/ERF domain profile. 139 196 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 Pfam AP2 domain 139 188 IPR001471 GO:0003700|GO:0006355
Vium7410g00002 375 MobiDBLite consensus disorder prediction 360 375 - -
Vium7410g00002 375 Gene3D AP2/ERF domain 138 198 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7410g00002 Vium-Chr7410 44346 46731 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7410g00002 136 203 AP2-EREBP Transcription Factor Family AT2G33710 77.941 7.75e-34 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium7410g00002 AP2 2.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7410g00002 - - vun:114180418 495.738