Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7404g00002 ATGCCGAAGGTTAAAGCTGATGCTAAAGCTGCCGATAACAGGTTGAAGCGCAAGGGCGCTGGTGCTGGTAGGAAGCAATCAAAGAAAGCTGCTAAGGATCCTAATAAGCCGAAAAGACCTCCAAGTGCTTTCTTCGTTTTCATGTCTGAGTTCAGAGAGCAGTTCAAGAAGGAACATCCAACCAACAAATCTGTTGCTGTTGTTGGCAAAGCTGGTGGTGACAAATGGAAATCTCTGTCTGAGGCGGAAAAAGCACCCTTCATTGCTAGGGCTGAGAAGAAAAAAGAAGAGTATGAGAAGAGTATCTTGGCTTATAATAAGAAATTGGAAGGAAAAAATTCAGAGGAAGAAGAGTCTGACAAGTCGAAATCTGAAGTTAACGACGAGGAGGAAGACGAGGAGGATGATGAAGATGATGAGTGA 423 0.4374 MPKVKADAKAADNRLKRKGAGAGRKQSKKAAKDPNKPKRPPSAFFVFMSEFREQFKKEHPTNKSVAVVGKAGGDKWKSLSEAEKAPFIARAEKKKEEYEKSILAYNKKLEGKNSEEEESDKSKSEVNDEEEDEEDDEDDE 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7404g00002 140 MobiDBLite consensus disorder prediction 105 121 - -
Vium7404g00002 140 Coils Coil 88 132 - -
Vium7404g00002 140 MobiDBLite consensus disorder prediction 1 42 - -
Vium7404g00002 140 Pfam HMG (high mobility group) box 37 106 IPR009071 -
Vium7404g00002 140 SMART hmgende2 36 107 IPR009071 -
Vium7404g00002 140 CDD HMG-box_AtHMGB1-like 38 91 - -
Vium7404g00002 140 Gene3D High mobility group box domain 21 123 IPR036910 -
Vium7404g00002 140 MobiDBLite consensus disorder prediction 1 19 - -
Vium7404g00002 140 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 37 106 IPR009071 -
Vium7404g00002 140 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 5 139 IPR031061 -
Vium7404g00002 140 MobiDBLite consensus disorder prediction 105 140 - -
Vium7404g00002 140 MobiDBLite consensus disorder prediction 122 140 - -
Vium7404g00002 140 SUPERFAMILY HMG-box 28 110 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7404g00002 Vium-Chr7404 23968 25386 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Vium7404g00002 HMG_box 2.9e-23 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7404g00002 K25507 - gmx:100305957 193.741