Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7403g00010 ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCTTGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATTACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA 993 0.4512 MAMQTVYLKEHEGNAPNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHLAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHYKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7403g00010 330 MobiDBLite consensus disorder prediction 209 280 - -
Vium7403g00010 330 MobiDBLite consensus disorder prediction 241 280 - -
Vium7403g00010 330 SMART cbf3 159 220 IPR001289 GO:0003700|GO:0006355
Vium7403g00010 330 PRINTS CCAAT-binding transcription factor subunit B signature 163 185 IPR001289 GO:0003700|GO:0006355
Vium7403g00010 330 PRINTS CCAAT-binding transcription factor subunit B signature 194 217 IPR001289 GO:0003700|GO:0006355
Vium7403g00010 330 ProSiteProfiles NF-YA/HAP2 family profile. 160 220 IPR001289 GO:0003700|GO:0006355
Vium7403g00010 330 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 163 217 IPR001289 GO:0003700|GO:0006355
Vium7403g00010 330 Gene3D - 160 222 - -
Vium7403g00010 330 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 77 283 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7403g00010 Vium-Chr7403 45215 49915 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7403g00010 1 330 CCAAT-HAP2 Transcription Factor Family AT3G05690 42.816 3.74e-60 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium7403g00010 CBFB_NFYA 2.1e-25 No_clan