Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium7403g00009 | ATGGCGATGCAAACTGTTTATCTTAAAGAACATGAAGGAAATGCACCCAATTCTGTGGGGGCCTTGTCATCTGCAGCTTCAGCACCCTGGTGGAGTGCTTTTGGATCTCAACCTGTTCATGGGGTGGAGTCTTGTGGCCAAATGAAACCCTTTTCATTGGAGCTTCCTAACTGCATAAACCATCTTGCTGCCAATAAGCCATCGGCAAGAGGAGCTGAACAAGTGTTGGGCAAAGGACACACAACTCAGTTTACCATCTTTCCAGATGATTGTAAAATGTCAGATGATGCGCAGACGCTTCAGACAACCATATCACTGCAGCCATCACTAGCTGACTCTCACTCTCGTTTTGAGATAGGATTTAGTCAGCCCATGATATGTGCAAAATATCCTTATACGGATCAATTTTATGGGCTCTTCTCAGCTTATGCACCTCAAATTTCGGGACGTATAATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATTACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA | 993 | 0.4512 | MAMQTVYLKEHEGNAPNSVGALSSAASAPWWSAFGSQPVHGVESCGQMKPFSLELPNCINHLAANKPSARGAEQVLGKGHTTQFTIFPDDCKMSDDAQTLQTTISLQPSLADSHSRFEIGFSQPMICAKYPYTDQFYGLFSAYAPQISGRIMLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHYKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV | 330 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium7403g00009 | 330 | MobiDBLite | consensus disorder prediction | 209 | 280 | - | - | |
Vium7403g00009 | 330 | MobiDBLite | consensus disorder prediction | 241 | 280 | - | - | |
Vium7403g00009 | 330 | SMART | cbf3 | 159 | 220 | IPR001289 | GO:0003700|GO:0006355 | |
Vium7403g00009 | 330 | PRINTS | CCAAT-binding transcription factor subunit B signature | 163 | 185 | IPR001289 | GO:0003700|GO:0006355 | |
Vium7403g00009 | 330 | PRINTS | CCAAT-binding transcription factor subunit B signature | 194 | 217 | IPR001289 | GO:0003700|GO:0006355 | |
Vium7403g00009 | 330 | ProSiteProfiles | NF-YA/HAP2 family profile. | 160 | 220 | IPR001289 | GO:0003700|GO:0006355 | |
Vium7403g00009 | 330 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 163 | 217 | IPR001289 | GO:0003700|GO:0006355 | |
Vium7403g00009 | 330 | Gene3D | - | 160 | 222 | - | - | |
Vium7403g00009 | 330 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 77 | 283 | IPR001289 | GO:0003700|GO:0006355 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium7403g00009 | Vium-Chr7403 | 45215 | 49916 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium7403g00009 | 1 | 330 | CCAAT-HAP2 Transcription Factor Family | AT3G05690 | 42.816 | 3.74e-60 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | NF-YA | Vium7403g00009 | CBFB_NFYA | 2.1e-25 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium7403g00009 | K08064 | - | gmx:100815382 | 565.844 |