LGRPv2

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium7403g00007	ATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA	540	0.4556	MLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV	179

Showing 1 to 1 of 1 entries

Show entries

Search:

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vium7403g00007	179	MobiDBLite	consensus disorder prediction	58	129	-	-
Vium7403g00007	179	Gene3D	-	9	71	-	-
Vium7403g00007	179	PRINTS	CCAAT-binding transcription factor subunit B signature	12	34	IPR001289	GO:0003700\|GO:0006355
Vium7403g00007	179	PRINTS	CCAAT-binding transcription factor subunit B signature	43	66	IPR001289	GO:0003700\|GO:0006355
Vium7403g00007	179	SMART	cbf3	8	69	IPR001289	GO:0003700\|GO:0006355
Vium7403g00007	179	PANTHER	TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED	1	132	IPR001289	GO:0003700\|GO:0006355
Vium7403g00007	179	MobiDBLite	consensus disorder prediction	90	129	-	-
Vium7403g00007	179	ProSiteProfiles	NF-YA/HAP2 family profile.	9	69	IPR001289	GO:0003700\|GO:0006355
Vium7403g00007	179	Pfam	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B	12	66	IPR001289	GO:0003700\|GO:0006355

Showing 1 to 9 of 9 entries

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium7403g00007	Vium-Chr7403	42415	44294	Tandem

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium7403g00007	1	179	CCAAT-HAP2 Transcription Factor Family	AT3G05690	50.777	4.60e-46	152

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YA	Vium7403g00007		CBFB_NFYA	3.5e-26	No_clan

Showing 1 to 1 of 1 entries

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium7403g00007	K08064		-	gmx:100527677	315.849

Showing 1 to 1 of 1 entries