Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7403g00007 ATGCTGCCACTTAACATGACATCTGATGATGGACCAATTTACGTAAATGCTAAGCAGTACCATGGAATCATTAGGCGTCGGCAGTCCCGTGCCAAAGCTGTACTTCATCACAAATTGACTAAACGTCGCAAGCCTTATATGCATGAATCTCGCCATCTCCATGCAATGAGGCGACCAAGAGGATGTGGTGGTCGCTTCTTGAACACAAGGAAATCTGGTAATGGAAATGGCAAAACTGGCAATGGAGTGCATGAAACTGTTGGTGAACGATTTCATTCCAGTGGTTCTCAGAGTTCTGAATTCCTTCAGTCTGAAGCTGGAACTTTGAATTCATCAAAAGAGACTAATGGCAGCAGTCCAAATATTTCTGGCTCAGAAGTGACTAGCATGTATTCGCGGGGAGGTCTTGACAGATTTTCCCTCAATCATTTTGGATCTTCTGTCCACACTCTGGCAGACATGATAGATGGTGGGCGTGGTATGATCATACCCCCCAAATGGGCTGCAGCAGCAGGTAACTGCTGCAACCTTAAAGTCTGA 540 0.4556 MLPLNMTSDDGPIYVNAKQYHGIIRRRQSRAKAVLHHKLTKRRKPYMHESRHLHAMRRPRGCGGRFLNTRKSGNGNGKTGNGVHETVGERFHSSGSQSSEFLQSEAGTLNSSKETNGSSPNISGSEVTSMYSRGGLDRFSLNHFGSSVHTLADMIDGGRGMIIPPKWAAAAGNCCNLKV 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7403g00007 179 MobiDBLite consensus disorder prediction 58 129 - -
Vium7403g00007 179 Gene3D - 9 71 - -
Vium7403g00007 179 PRINTS CCAAT-binding transcription factor subunit B signature 12 34 IPR001289 GO:0003700|GO:0006355
Vium7403g00007 179 PRINTS CCAAT-binding transcription factor subunit B signature 43 66 IPR001289 GO:0003700|GO:0006355
Vium7403g00007 179 SMART cbf3 8 69 IPR001289 GO:0003700|GO:0006355
Vium7403g00007 179 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 132 IPR001289 GO:0003700|GO:0006355
Vium7403g00007 179 MobiDBLite consensus disorder prediction 90 129 - -
Vium7403g00007 179 ProSiteProfiles NF-YA/HAP2 family profile. 9 69 IPR001289 GO:0003700|GO:0006355
Vium7403g00007 179 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 12 66 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7403g00007 Vium-Chr7403 42415 44294 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7403g00007 1 179 CCAAT-HAP2 Transcription Factor Family AT3G05690 50.777 4.60e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vium7403g00007 CBFB_NFYA 3.5e-26 No_clan