Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7403g00006 ATGGCTGCTGCAGCTTCTTTTTCCTCTTCTGTCTGCAACAGAATATACAACCTTTCCCTCACCCACTCTTCCATTTCACGCACCTCCAACTTCCCTCAGAGACCCATTTTCCAAAAACCACCCAATCTTAGCCACAAGTCCCAAAATTTCAGTCTTTCGTTTCTTCCACTTCATCGTCTGTCCCCACCGTTCGCCACCTTCGATGGTTTGGAAGTGGGTCAAGACATCACAGAGTCCCGACAAGACGAACCGGTAACAGAAACCTCTGAAAAAACAGAACAAGAGGAAGAGCGAAAAGTTTCAGACTTGAACGACGATGCCGGGAGGCTCTATATTGGAAACTTGCCATATTCAATTACTAATTCCCAATTGGCAGAGCTCTTTGGAGAAGCTGGTAGCGTGGTGTCTGTTGAGATTGTGTATGATCGTGTCACGGGTAGAAGCAGGGGATTCGCATTTGTCACAATGGCAACTGTAGAGGATGCTAAAGAGGCAATTCGAATGTTTGATGGCTCTCAAGTTGGTGGTAGGACTGCGAAGGTAAACTTCCCAGAGGTACCGAAAGGAGGGGAAAGATTGGTAATGGGGGCAAAAGTGAGGAACAACTACAGAGGGTTTGTAGACAGCCCTCACAAGATCTATTGTGGAAACCTTGGGTGGGGAGTGAACTCACAGGGTCTTAGAGAAGCTTTTGCTGAGCAACCAGGCGTATTGAGCGCCAAAGTCGTCTATGAGAAGGACAGTGGAAGATCTCGAGGTTTTGGCTTTGTTTCTTTCACAACTGCCGAATCTGCAGCAGCTGCCTTGGACTTGATGAATGGTGTGGAAGTACAAGGTCGCCCATTGCGGTTGAATTTGGCTGAAGCTAGGGCAGCATCATCTCCTCCAGTACTTGAGGATAATGCAGGAATCAATGTTGAAAGCTCGGAATTGGTCTCAAGTGCCAGAACATAA 954 0.4738 MAAAASFSSSVCNRIYNLSLTHSSISRTSNFPQRPIFQKPPNLSHKSQNFSLSFLPLHRLSPPFATFDGLEVGQDITESRQDEPVTETSEKTEQEEERKVSDLNDDAGRLYIGNLPYSITNSQLAELFGEAGSVVSVEIVYDRVTGRSRGFAFVTMATVEDAKEAIRMFDGSQVGGRTAKVNFPEVPKGGERLVMGAKVRNNYRGFVDSPHKIYCGNLGWGVNSQGLREAFAEQPGVLSAKVVYEKDSGRSRGFGFVSFTTAESAAAALDLMNGVEVQGRPLRLNLAEARAASSPPVLEDNAGINVESSELVSSART 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7403g00006 317 Gene3D - 195 295 IPR012677 -
Vium7403g00006 317 SMART rrm1_1 109 182 IPR000504 GO:0003723
Vium7403g00006 317 SMART rrm1_1 212 285 IPR000504 GO:0003723
Vium7403g00006 317 SUPERFAMILY RNA-binding domain, RBD 103 185 IPR035979 GO:0003676
Vium7403g00006 317 PANTHER OS02G0815200 PROTEIN 35 291 - -
Vium7403g00006 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 108 186 IPR000504 GO:0003723
Vium7403g00006 317 FunFam 33 kDa ribonucleoprotein, chloroplastic 193 297 - -
Vium7403g00006 317 CDD RRM2_NsCP33_like 212 287 - -
Vium7403g00006 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 213 283 IPR000504 GO:0003723
Vium7403g00006 317 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 110 178 IPR000504 GO:0003723
Vium7403g00006 317 Gene3D - 70 191 IPR012677 -
Vium7403g00006 317 MobiDBLite consensus disorder prediction 77 102 - -
Vium7403g00006 317 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 211 289 IPR000504 GO:0003723
Vium7403g00006 317 CDD RRM1_PSRP2_like 109 188 - -
Vium7403g00006 317 SUPERFAMILY RNA-binding domain, RBD 208 291 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7403g00006 Vium-Chr7403 35138 39148 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7403g00006 95 290 Eukaryotic Initiation Factors Gene Family AT3G16380 34.000 1.09e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7403g00006 - - gmx:100814852 506.523