Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7403g00004 ATGAACGACTTGTTATCGAATTTGTTCTCGAAGGGAAAGCAGCAGCAACAACAAGAAGGGCAGCACGTGATTGAAATAACACAAAGTTGCATGAACTTGGACAAGTTCTTCGAAGAAGTGGAATCGGTGAAGGAAGAGCTGAAGGAGCTAGAGCGTCTCCACCTAAGTCTCCGTGCCTCAAACCAAAACGGAAAAGCGCTTCACAGCCCCAAGGGCGTTAGGGAGCTTCGGTCTCGCATGGACCTGGACGTCGCTCTTGCTCTCACCAAAGCCAAGCTCGTGAAGACTCGCTTGGAGGCTCTCCACCGCGCCAACCAAGCCACCCTCTCCTTGGCCGACTGCGGACCCGGTTCGTACTCCCACCGGACCCGAACCGCACTGGTCGGAGCCTTGACCAAGAATCTGAAACAGTCCATGGAGAGTTTTAATAAGCTGAGGGAGCAGATATCGTACGAGTACAGAGACACCGTGCAACGTAGATACTACGCTGTCACCGGAGAGAACCCTGATCCTGACACCATTGATCTCCTAATCTCTACGGGTGAGAGTGAAAGTTTCTTACAGAAAGCCATCCAACAGCAAGGGCGAGCCAGCATCATGGACACCATCCAAGAGATTCAGGAGAGGCACGGCACGGTGAAAGAGATAGAGAGAAGTCTACACGAGCTGCACCAAGTGTTCTTGGACATGGCAGTGTTGGTCCAACATCAGGGTGAACACTTGGATGACATAGAGAGCCACATGGCGCTTGCAAATTCCTCCGTCATCAAAGGTGTGCATCATTTGCAGGTTGTGAAGAATCATCAGAAAAACACCCGTAACTTGACCTGCTTTGCCATACTCCTCTTCATTATCGTTTTGGTCATAGTTCTCCCCATTGTTTTCAGAAGTTGA 894 0.5056 MNDLLSNLFSKGKQQQQQEGQHVIEITQSCMNLDKFFEEVESVKEELKELERLHLSLRASNQNGKALHSPKGVRELRSRMDLDVALALTKAKLVKTRLEALHRANQATLSLADCGPGSYSHRTRTALVGALTKNLKQSMESFNKLREQISYEYRDTVQRRYYAVTGENPDPDTIDLLISTGESESFLQKAIQQQGRASIMDTIQEIQERHGTVKEIERSLHELHQVFLDMAVLVQHQGEHLDDIESHMALANSSVIKGVHHLQVVKNHQKNTRNLTCFAILLFIIVLVIVLPIVFRS 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7403g00004 297 SUPERFAMILY t-snare proteins 31 258 IPR010989 GO:0016020|GO:0016192
Vium7403g00004 297 FunFam Syntaxin 132 196 295 - -
Vium7403g00004 297 Gene3D - 192 296 - -
Vium7403g00004 297 SMART tSNARE_6 198 265 IPR000727 -
Vium7403g00004 297 CDD SNARE_syntaxin1-like 202 263 - -
Vium7403g00004 297 Pfam SNARE domain 241 291 IPR000727 -
Vium7403g00004 297 SMART SynN_4 28 154 IPR006011 GO:0016020
Vium7403g00004 297 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 30 160 - -
Vium7403g00004 297 Gene3D - 32 160 - -
Vium7403g00004 297 CDD SynN 33 190 IPR006011 GO:0016020
Vium7403g00004 297 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium7403g00004 297 PANTHER SYNTAXIN 25 286 IPR045242 -
Vium7403g00004 297 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vium7403g00004 297 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
Vium7403g00004 297 Coils Coil 33 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7403g00004 Vium-Chr7403 22832 24587 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7403g00004 31 277 SNARE and Associated Proteins AT3G11820 63.563 1.20e-111 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7403g00004 K08486 - gmx:100790221 444.506