Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7403g00003 ATGCACGACTTGTTGTCCACCACCTCCCCCTGCCGCAGCAACCGACTTCCGCCATCGTCGGCTCACAGTGTCATCGAGATGGCAGGCTGCGACGACGACGATGGAGCAACGAGCCTGGCCACGTACTTCGGCAACGTGGAAGCAATAACGGAAGAGCTGAACGAGGTGGAGCGGTTGAAGCAGAATCTGAAGAGGTCTCACGAACAAGGCAAGACCCTTCACAATGGTAAAGCCGTGAAGGACCATCGCTTCGCCATGGAAGCTGACGTGGCACTTGCTCTGGAGACCGCGAAGGTCATCAGGTTCAAGTTGGAGACGCTTGAACGAGCCAACGCCGACAACCGGAGCCTCCCTGGTTGTGGACCGGGTTCGTCCTCCGACCGGTCCCGAACCTCCTTGGTGTTCTCCCTGAGGAAGAAGCTGAAGGACTCCTTGGACGGCTTCAATAAACTCCGTGAGCAGATAAATGCAGAACACCGTGAGACCGTCCAGCGCCAATATTTCACCGTGACGGGCAAAAATCCCGACGACGAAACCCTGGACCTCTTGATCTCTTCCGGTGAGAGTGAGAATTTAGTAGAAAGAGCGATTGAGGAGGGTAGAGGAAGAATTGAGGAGAGTATTAATGAAATAAAAGAGAGGCATAATGGGATGAAAGAGTTAGAGAGGAATCTGAAGGAGTTGCACCAGGTGTTCCTTGACATGGCAGTGCTGATTCAATCTCAAGGGGAGCAATTGGATGACATAGAGAGCCAGGTCGCAAGAACAAACTCCTTCGTCAGGAATGGGACTCAGAATCTGGAAACTGCAAGGAAGGAGCAAAAAAAACACCGTAAATGGGGCTACTGTGCTATTATCCTTCTTCTGGCAATTGTGTTGTTCGTCGTGCTCTTTTTTGTCAGACCATGGCGAAAGTAA 918 0.5185 MHDLLSTTSPCRSNRLPPSSAHSVIEMAGCDDDDGATSLATYFGNVEAITEELNEVERLKQNLKRSHEQGKTLHNGKAVKDHRFAMEADVALALETAKVIRFKLETLERANADNRSLPGCGPGSSSDRSRTSLVFSLRKKLKDSLDGFNKLREQINAEHRETVQRQYFTVTGKNPDDETLDLLISSGESENLVERAIEEGRGRIEESINEIKERHNGMKELERNLKELHQVFLDMAVLIQSQGEQLDDIESQVARTNSFVRNGTQNLETARKEQKKHRKWGYCAIILLLAIVLFVVLFFVRPWRK 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7403g00003 305 FunFam Syntaxin 132 201 301 - -
Vium7403g00003 305 PANTHER SYNTAXIN 53 289 IPR045242 -
Vium7403g00003 305 MobiDBLite consensus disorder prediction 1 20 - -
Vium7403g00003 305 Pfam Syntaxin 42 243 IPR006011 GO:0016020
Vium7403g00003 305 Coils Coil 46 69 - -
Vium7403g00003 305 SUPERFAMILY t-snare proteins 41 263 IPR010989 GO:0016020|GO:0016192
Vium7403g00003 305 Gene3D - 203 301 - -
Vium7403g00003 305 SMART SynN_4 34 160 IPR006011 GO:0016020
Vium7403g00003 305 ProSitePatterns Syntaxin / epimorphin family signature. 214 253 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium7403g00003 305 CDD SynN 39 190 IPR006011 GO:0016020
Vium7403g00003 305 Pfam SNARE domain 244 296 IPR000727 -
Vium7403g00003 305 CDD SNARE_syntaxin1-like 208 269 - -
Vium7403g00003 305 Gene3D - 39 166 - -
Vium7403g00003 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 208 270 IPR000727 -
Vium7403g00003 305 Coils Coil 138 158 - -
Vium7403g00003 305 Coils Coil 204 231 - -
Vium7403g00003 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 36 166 - -
Vium7403g00003 305 SMART tSNARE_6 203 270 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7403g00003 Vium-Chr7403 10553 11470 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7403g00003 27 303 SNARE and Associated Proteins AT3G11820 60.072 2.28e-111 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7403g00003 K08486 - tcc:18598421 349.747