Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium73g00001 ATGGCTGTGGAGTTGATGAGCTTGCCGAAAATGGAGGAACAGAAGGCAATTCAAGAAGCAGCCATGGAAGGTCTCAAGGGAATGGAAAACTTCATCCATCTTCTCTCCAACGAACCCTCTCATCTCAACACTCACCTCACCCAAGCAACCGTTTCAAACTTCAAAAAGCTCATCTCTTTGCTCAACGGAACCGGCCATGCCCGTTTCCGTCGCGCGCCTCTCCCTTCAAACAACCAACCCATTCCACCGGCTAACCCGGTCACCGTCCACCAACCTCCCACCACCTTCGCCCCCACGCACTCGCACTCTCTCACTCTCGATTTCACCAAACCTAACATCTTCGCCGCCACCAACAATAAGTCCTCGGATCTCGAATTCTCAAAAGAAACCTTCAGCGTCTCCTCCAACTCCTCCTTCATCTCCTCCGCCATCACCGCCGATGGCAGCGTCTCCAACGGCAACCAAGCCTCCTCTCTCTTCCTCACCTCGCCTCCGCCGCCTTCTTCCTCCGGAAAACCGCCACTCGTCAAGAAGCGGTGCCACGACCACTTCGACGACGTCTCCGGCTCCACCAAGTGCCACTGCATTAAGAGAAGTCGGGTGAAGAAGACGGTGAGAGTGCCGGCGATTAGTACGAAAATCGCCGAATGCTCGGACGAGTTCTCGTGGAGGAAGTACGGGCAGAAGCCGATCAAGGGATCACCGTACCCGAGGTGA 717 0.5537 MAVELMSLPKMEEQKAIQEAAMEGLKGMENFIHLLSNEPSHLNTHLTQATVSNFKKLISLLNGTGHARFRRAPLPSNNQPIPPANPVTVHQPPTTFAPTHSHSLTLDFTKPNIFAATNNKSSDLEFSKETFSVSSNSSFISSAITADGSVSNGNQASSLFLTSPPPPSSSGKPPLVKKRCHDHFDDVSGSTKCHCIKRSRVKKTVRVPAISTKIAECSDEFSWRKYGQKPIKGSPYPR 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium73g00001 238 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 14 238 IPR044810 GO:0003700
Vium73g00001 238 Pfam Plant zinc cluster domain 177 215 IPR018872 -
Vium73g00001 238 MobiDBLite consensus disorder prediction 156 176 - -
Vium73g00001 238 ProSiteProfiles WRKY domain profile. 212 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium73g00001 238 Pfam WRKY DNA -binding domain 219 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium73g00001 238 SUPERFAMILY WRKY DNA-binding domain 213 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium73g00001 238 Gene3D WRKY domain 197 238 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium73g00001 Vium-Chr73 9317 13778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium73g00001 1 238 WRKY Transcription Factor Family AT4G31550 53.114 3.99e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium73g00001 Plant_zn_clust 1.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium73g00001 - - vum:124836200 452.981