Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7395g00001 ATGAGAAACATTGCAATTATGTATTTGCCTGACGGAATCAAACAAGTGAAAAGACTTGACATCCTTGAGTCCAAGCGTTTGCCAGCGAACAATTATAACTGCGTCCCTTTAACACCAAGGTCTAGATTGGAAAGGCTTCTGAGGGAAAGAGAGCTAAGGAAGTCTTTCAAGAATCAACCAACTGATGAAGCAAGAGATGGGAGCAAAGAGGGAGAACAATGTTCTGGTGATTCAATAAGTGAGAATGAAATTTCAGGTGTTCATAAAGAGGAAGAAGCCACGGATACGAATAGGCAAGATGAGAGGCCAGGCAAACAACGTTTGTTGGTGGTAGCTAACAGGTTGCCAGTTTCTGCTGTAAGAGATGGTGTGGAGTCATATCATCTTGAGATCAGTGTAGGAGGGCTAGTCAGTGCACTTCTAGGTGTAAAGGAGTTTGATACCAGATGGATTGGGTGGGCTGGCGTGAATGTGCCTGATGAGGTTGGACGGAGAGCATTGACTAAAGCTTTGGCTGAAATGCGGTGTATTCCAGTATTTCTTGATGAGGAGATAGTTAATCAGTACTATAATGGCTACTGCAACAACATCTTGTGGCCTCTATTTCATTACCTTGGGCTTCCACAAGAAGATCGACTTGCTACCACTCGTACTTTCCAATCCCAATTTGATGCATATAAGACGGCAAACCAAATCTTTGCTGATGTAGTAAATATGCATTATGAGGAAGGAGATGTTGTTTGGTGCCATGATTACCACCTAATGTTCCTTCCAAAATGTTTAAAGGAGCGCAACGACAAAATGAAAGTTGGTTGGTTTCTCCATACACCCTTTCCTTCCTCAGAAATACATAGGACTCTACCATCCAGAACAGAGCTGTTGAGATCAGTCATTGAAGCTGATCTTGTGGGATTCCATACCTATGATTATGCAAGGCATTTTGTTAGTGCTTGTACTCGTATTCTTGGGCTTGAGGGCACACCTGACGGAGTAGAAGATCGAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGGATTGACTCTGAGAGATTCATTCAAGCCCTTGAACTCCCTGAAGTCCAGGCGCACATGAAAGAACTGAAAGAAAGATTTGCGGGCCGAAAGGTAATGTTGGGCGTCGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATATTGGCATTTGAAAAGTTCCTCGAGGAGAATTCCCACTGGCGTGATAAAGTTGTCTTGCTGCAAATTGCTGTACCTACTAGAAAAGATGTTCCTGAATACCAAAGGCTTGCAAGCCAAGTGCATGAGATTGTAGGACGCATCAATGGAAGATTTGGAACACTTACAGCTGTTCCACTACACCATCTGGATCGATCACTTGACTTTCATGAATTATGTGCTCTCTATGCTGTAACTGACGTCGCACTTGTTACATCTTTGAGAGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCGTGCCAAGCATCCAAGAAGGGGGTTCTCATTTTAAGTGAGTTTGCTGGAGCAGCACAGTCTCTTGGTGCTGGTGCTATCTTGGTAAATCCTTGGAACATAACAGAGGTTGCTGCTTCTATTGGCTATGCGTTGGATATGCCAGCCGATGAAAGAGAAAAACGGCATCAGTTTAATTTCAGACATGTGAAGACTCACACATCACAGGAATGGGCTGCAACTTTTGTGAGTGAACTAAATGATACCATTGTTGAAGCTCAGCTTAGGACAAGACAAGATCCTCCATTGCTTCCCAACAAAGTGGCAGTTGACTGTTATAAAAAATCCAGTAACCGGTTAATCATACTGGGTTTCAATGCCACTTTGACTGAGCCAGTGGATGCCCTTGGACGGGCTGGTCAAATTAGAGAACTGGAACCTAAATTACACCCAAATCTGAAAGGACCTTTAAAGATGTTATCCGATGATCCACAGACAACGATAGTACTTCTCAGTGGGAGCAATCGAGCAGTCCTGGACAAAAACTTCAGTGAATTTAATATGTGGTTGGCAGCGGAAAATGGGATGTTTCTGAGACTCACTTCAAGTGAGTGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGCGTGAAGCATGTTTTTGAGTATTTTACTGAAAGGACTCCCCGGTCTCATTTTGAGCTTAGGGAGACTTCAATAGTATGGAATTACAAGTACGCAGATGTTGAATTTGGAAAGATTCAAGCAAGAGATTTGCTTCAGCATCTGTGGACAGGACCAATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCAGTTGAGGTGCGCACAGTTGGCGTGTCAAAGGGAGCAGCTATTGATCGTATCCTTGGAGAGATAGTTCATAACAAAGGCATGACGGCACCAATTGACTATGTCCTATGCATTGGGCACTTTCTAGCCAAGGACGAAGATGTGTATAAATTTTTTGAGCCGGAGCTCCCTTGTGAATCACCTTCAGTACCAAGAGCTATGCTATCCAAATCCAAGTCATACAGACCATCATCTTTGCTAAAATTTGCAGCCAACAAAGTCGGGACAAACGCTGCTCAGTACAAGAAACAACGTTCGTTGTCAAGCATAGAAAAGAGAGAAATTGAACTGAGAGCAACATATCGTGATAGAATATCACAGCATGAAGGTTCCTCGGTGCTTGATCTAAAAGGTGATAATTACTTCTCTTGTGTTGTTGGACGGAAAAGATCAAGTGCACGTTACCATCTTAAAACCTCAGATGATGTTGTCAACCTCTTAAGTGACTTGGCAGAACATTCTTCATCAACAACTTAG 2823 0.4286 MRNIAIMYLPDGIKQVKRLDILESKRLPANNYNCVPLTPRSRLERLLRERELRKSFKNQPTDEARDGSKEGEQCSGDSISENEISGVHKEEEATDTNRQDERPGKQRLLVVANRLPVSAVRDGVESYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGRRALTKALAEMRCIPVFLDEEIVNQYYNGYCNNILWPLFHYLGLPQEDRLATTRTFQSQFDAYKTANQIFADVVNMHYEEGDVVWCHDYHLMFLPKCLKERNDKMKVGWFLHTPFPSSEIHRTLPSRTELLRSVIEADLVGFHTYDYARHFVSACTRILGLEGTPDGVEDRGKLTRVAAFPIGIDSERFIQALELPEVQAHMKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENSHWRDKVVLLQIAVPTRKDVPEYQRLASQVHEIVGRINGRFGTLTAVPLHHLDRSLDFHELCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFRHVKTHTSQEWAATFVSELNDTIVEAQLRTRQDPPLLPNKVAVDCYKKSSNRLIILGFNATLTEPVDALGRAGQIRELEPKLHPNLKGPLKMLSDDPQTTIVLLSGSNRAVLDKNFSEFNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIVWNYKYADVEFGKIQARDLLQHLWTGPISNASLDVVQGGRSVEVRTVGVSKGAAIDRILGEIVHNKGMTAPIDYVLCIGHFLAKDEDVYKFFEPELPCESPSVPRAMLSKSKSYRPSSLLKFAANKVGTNAAQYKKQRSLSSIEKREIELRATYRDRISQHEGSSVLDLKGDNYFSCVVGRKRSSARYHLKTSDDVVNLLSDLAEHSSSTT 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7395g00001 940 CDD GT20_TPS 107 572 IPR001830 GO:0003824|GO:0005992
Vium7395g00001 940 SUPERFAMILY HAD-like 605 932 IPR036412 -
Vium7395g00001 940 Gene3D Glycogen Phosphorylase B; 354 557 - -
Vium7395g00001 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 99 353 - -
Vium7395g00001 940 Gene3D - 633 790 IPR023214 -
Vium7395g00001 940 Gene3D - 696 776 - -
Vium7395g00001 940 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 95 934 IPR001830 GO:0003824|GO:0005992
Vium7395g00001 940 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 107 572 IPR012766 GO:0003825|GO:0005992
Vium7395g00001 940 MobiDBLite consensus disorder prediction 52 72 - -
Vium7395g00001 940 MobiDBLite consensus disorder prediction 83 105 - -
Vium7395g00001 940 Gene3D Glycogen Phosphorylase B; 98 353 - -
Vium7395g00001 940 Pfam Trehalose-phosphatase 634 846 IPR003337 GO:0003824|GO:0005992
Vium7395g00001 940 Pfam Glycosyltransferase family 20 107 572 IPR001830 GO:0003824|GO:0005992
Vium7395g00001 940 CDD HAD_TPP 605 824 - -
Vium7395g00001 940 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 354 557 - -
Vium7395g00001 940 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 696 776 - -
Vium7395g00001 940 MobiDBLite consensus disorder prediction 52 105 - -
Vium7395g00001 940 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 106 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7395g00001 Vium-Chr7395 18879 33306 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7395g00001 27 938 Trehalose Biosynthesis Gene Families AT1G78580 73.220 0.0 1378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7395g00001 K16055 - gmx:100816642 1625.14