Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7392g00002 ATGCCAGAAAACAGGCAGGTTCTCAGGAATGCTGATTCTACACCTTCTGGTGACAACATTGAAGAAGCGATTCGTCGTTTGAAAATCAATGATAATTGGGACAGAGATGCTGCAGCTCAATCTACCCAATATCCAGATCGACCCGGTGAACCCGATTGCTTGTATTATTTGAGGACTGGAATGTGTGGTTATGGGAGTAACTGTCGCTACCATCACCCTGCCCATATTTCAATTGGTTCTCATTATGGTGAAGAACTCCCCCAGAGGACCGGGCAACCTGATTGTGAGTATTTTCTTAAGACAGGGACATGCAAATATGGATCCACATGTAAATACCATCATCCAAAGGACAGGCGTGGTGCTGCTCCTGTGTCATTCAATACTTTAGGTCTTCCAATGCGTCAGGAAGAAAAATCATGTCCCTATTACATGAGAACCGGGTCTTGTAAGTTTGGTGTTGCATGCAAGTTTCATCATCCACAGCATGCTTCCATTGGAGCATATCCCTTGGCTGGATCTCCTACCTCAACAATTATCCCTACATCAGGTTTACCATATGCCGGAGGGTTTCCTGCATGGTCAGCAGTGCCAAGAATGTCATATTTATCTGGGCAAGGTGTTCAATCTTATGTGCCACCTTTTCTCTCTTCTTCACAAGGCATTATACCCGTGCAGAGCTGGAACAACTACATGGGAAGTATGAATCCAACAATGCCTACTGGTTATCTTGGATCTAATCTTGTTTATGACTTCATGAATCTGGGGGAGTCACTTTTCGGCGGGCAGGCGATAAATTCAGCTCTCCCAAATCGACCTGATCAACCAGAATGTAGATACTTTATGAGCACTGGGACCTGCAAATATGGATCCGATTGCAAGTTCCACCATCCAAAGGAAAGAGTATCTCAATCATTAATAAATCCACTTGGCCTTCCTGTGAGACCTGGGCAAGCTGTATGCTCTTACTACAGAATCTATGGAATGTGCAAATTTGGTCCAACATGCAAATTTGATCATCCAGTGTTGACTATCCCTCAGAACTATGGCTTGACCTCACCTGCTCTAGCACTTGATGCTCCTCTTATTAGTAACCAAAGAGGGTTGTCAAGTGTACAACCACCTGAGACATCTCCTTCTAAATTATCAAGTGACAACAAGCTTCAGCACTCTGATGCAAAAGCTGCCACAGAAGATTCATCCAAACAAGCTGATACTACACCAAATTCCTTCCCAGCCTCCTCAGAGCCTTTACATGACTAA 1260 0.4421 MPENRQVLRNADSTPSGDNIEEAIRRLKINDNWDRDAAAQSTQYPDRPGEPDCLYYLRTGMCGYGSNCRYHHPAHISIGSHYGEELPQRTGQPDCEYFLKTGTCKYGSTCKYHHPKDRRGAAPVSFNTLGLPMRQEEKSCPYYMRTGSCKFGVACKFHHPQHASIGAYPLAGSPTSTIIPTSGLPYAGGFPAWSAVPRMSYLSGQGVQSYVPPFLSSSQGIIPVQSWNNYMGSMNPTMPTGYLGSNLVYDFMNLGESLFGGQAINSALPNRPDQPECRYFMSTGTCKYGSDCKFHHPKERVSQSLINPLGLPVRPGQAVCSYYRIYGMCKFGPTCKFDHPVLTIPQNYGLTSPALALDAPLISNQRGLSSVQPPETSPSKLSSDNKLQHSDAKAATEDSSKQADTTPNSFPASSEPLHD 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7392g00002 419 MobiDBLite consensus disorder prediction 399 413 - -
Vium7392g00002 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 138 161 IPR000571 GO:0046872
Vium7392g00002 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 91 116 IPR000571 GO:0046872
Vium7392g00002 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vium7392g00002 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 273 298 IPR000571 GO:0046872
Vium7392g00002 419 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 316 340 IPR000571 GO:0046872
Vium7392g00002 419 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Vium7392g00002 419 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vium7392g00002 419 Gene3D - 265 343 - -
Vium7392g00002 419 Gene3D - 126 168 - -
Vium7392g00002 419 SUPERFAMILY CCCH zinc finger 133 162 IPR036855 GO:0046872
Vium7392g00002 419 ProSiteProfiles Zinc finger C3H1-type profile. 134 162 IPR000571 GO:0046872
Vium7392g00002 419 SUPERFAMILY CCCH zinc finger 275 300 IPR036855 GO:0046872
Vium7392g00002 419 SMART c3hfinal6 89 116 IPR000571 GO:0046872
Vium7392g00002 419 SMART c3hfinal6 136 161 IPR000571 GO:0046872
Vium7392g00002 419 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Vium7392g00002 419 SMART c3hfinal6 271 298 IPR000571 GO:0046872
Vium7392g00002 419 SMART c3hfinal6 314 341 IPR000571 GO:0046872
Vium7392g00002 419 ProSiteProfiles Zinc finger C3H1-type profile. 89 117 IPR000571 GO:0046872
Vium7392g00002 419 ProSiteProfiles Zinc finger C3H1-type profile. 314 342 IPR000571 GO:0046872
Vium7392g00002 419 ProSiteProfiles Zinc finger C3H1-type profile. 271 299 IPR000571 GO:0046872
Vium7392g00002 419 PANTHER PROTEIN PHOSPHATASE RELATED 33 374 - -
Vium7392g00002 419 SUPERFAMILY CCCH zinc finger 312 340 IPR036855 GO:0046872
Vium7392g00002 419 MobiDBLite consensus disorder prediction 366 385 - -
Vium7392g00002 419 MobiDBLite consensus disorder prediction 366 419 - -
Vium7392g00002 419 SUPERFAMILY CCCH zinc finger 93 118 IPR036855 GO:0046872
Vium7392g00002 419 Gene3D - 45 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7392g00002 Vium-Chr7392 14840 19249 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7392g00002 1 401 C3H Transcription Factor Family AT1G04990 48.284 3.46e-120 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium7392g00002 zf-CCCH 4.2e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7392g00002 - - gmx:100812856 810.446