Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7380g00001 ATGGATACCAACCTCAACACTACATTCACAAACGTTAACACCACTTACAATCACGAGACCATGACCACAGATCAACAACACAACATCATCCTCCACGATCATCACCAAATTCCAATGGATGTTGGAATTTGGTCCAATCACCACCACCCTTTTCACCCACAACCCTCTTCCTCCTCTTCAACTAATTTCCTAACCGACGTCTTGGGAATCCAGTTTGAAGAAGATGAAGAGGAAGAGCTCGGAGCGATGAAGGAGATGATGTACCAGATGGCAGCGATGCAACCGGTCGACATAGACCCTGCCACCGTCAGAAAACCCAAGAGGCGAAACGTCCGCATAAGTGATGACCCTCAGAGTGTGGCTGCACGTCATCGAAGAGAAAAGATCAGTGAGAAAATCCGTATCCTTCAAAGACTTGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTTGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTCCTTCAATCAACACCACACATTCACTCCGTTAATGCCACTGCTTCCAACTCCGATTGCCCTTTTCCACCAACTACATTGCACGCTTCCACCTCCGTCAACCTGCCTCTTGGAATCCAATTCAACGCCGACCACCTTCAACATTCATCGGGGGACAATGAAAATGAGGAAAGGATTCAACTGTAA 687 0.4731 MDTNLNTTFTNVNTTYNHETMTTDQQHNIILHDHHQIPMDVGIWSNHHHPFHPQPSSSSSTNFLTDVLGIQFEEDEEEELGAMKEMMYQMAAMQPVDIDPATVRKPKRRNVRISDDPQSVAARHRREKISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRFLQSTPHIHSVNATASNSDCPFPPTTLHASTSVNLPLGIQFNADHLQHSSGDNENEERIQL 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7380g00001 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 118 173 IPR036638 GO:0046983
Vium7380g00001 228 CDD bHLH_AtIND_like 114 171 - -
Vium7380g00001 228 FunFam BHLH transcription factor 116 180 - -
Vium7380g00001 228 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 20 203 IPR045843 GO:0003700|GO:0006355
Vium7380g00001 228 Gene3D - 116 181 IPR036638 GO:0046983
Vium7380g00001 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 113 162 IPR011598 GO:0046983
Vium7380g00001 228 SMART finulus 119 168 IPR011598 GO:0046983
Vium7380g00001 228 Pfam Helix-loop-helix DNA-binding domain 123 162 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7380g00001 Vium-Chr7380 1052 1873 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7380g00001 82 183 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00120 74.510 9.47e-48 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium7380g00001 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7380g00001 - - var:108331264 421.394