Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium737g00001 ATGGTACCATGGAACAGAATTTTGACAAGCATAAAGTGGAAGGACAAAACTCTGCACCTAGCTACCAACAATGAGATACATAAGATCATGATTAAGAGCCCAAAAGAAGTGGATTTTGCTTTAAAACAGGAGGGTGGTCATTCTCAATCAATCAGTGATCCTGAAAAGGAAAAGGCTTCATCAAGCTCAGCAGCACAATGGCCAAGATTGAAGGATCCAAGGATTGTTCGAGTATCTAGAGCCTTTGGAGGGAAAGACAGGCATAGCAAGGTTTGCACAATAAGAGGGTTAAGAGACAGACGGGTACGATTATCAGTACCAACTGCTATCCAACTCTATGATCTTCAAGATAGGCTAGGGCTCAGTCAACCAAGCAAGGTTGTTGATTGGTTGCTGAATGCTGCTAAGCATGAAATTGATGAACTTCCACCACTGCCAATTATTCCTTCAGTGAATAACTTCACCCTTGGTTATCCATCTGCTGCTACTTCTAATGAAGCTGCAAACTCTCACTCTCACTCTCAGCCTAATGAACAACTTCTTAATATAAATAGCAACATTCACTGGCAAGGTTCAGACCAAAATTCTTCATGGAAATTAAAGCGTAAAGAAGTTTCAGGAGAAATGATCAGCACTGACAAGGCAAGTTGGATAAATAGAAGTGAAGAGGATAAGCAAGGAAGCAATAATGAAGGTCCTAGCACACATGTTATGCCAAATAATCTCTTGCCAAGGGTAAACCATCCTTCATTCTTGGGTCTGTTAAATACTATGCCACATGGTTACCACTGGGAAGCTTCCGCTGGTGATGTTTCTCATCCTCAGTTGGAAAACAATGGATTTTCAAACCAAACAGACATACACGGCATTAACGTCGTACCTTTCCCACCATCAACATTGTCTTTATCAACAAGGAATTCTCAAATTCTGCTATGTCCTCCAGGAGCGGCCCAGCCGTATTTCCCTTCACATTTTACAGCAATGGACATGGATCAGAGGCAAATCAACCACTATCAGATGTTGAGTTCAGGTTCTCAAAACCCATTGGCGAATTCTCTCAATCATTCTTTTAGCTTGGCTATGATGTCTCATAAACCCCTCCATTCACCCAACAGCAGCAAAAGCCCATCCCACAAAGACCAAGATTTCCCTTCCAAGTGA 1161 0.4195 MVPWNRILTSIKWKDKTLHLATNNEIHKIMIKSPKEVDFALKQEGGHSQSISDPEKEKASSSSAAQWPRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLPIIPSVNNFTLGYPSAATSNEAANSHSHSQPNEQLLNINSNIHWQGSDQNSSWKLKRKEVSGEMISTDKASWINRSEEDKQGSNNEGPSTHVMPNNLLPRVNHPSFLGLLNTMPHGYHWEASAGDVSHPQLENNGFSNQTDIHGINVVPFPPSTLSLSTRNSQILLCPPGAAQPYFPSHFTAMDMDQRQINHYQMLSSGSQNPLANSLNHSFSLAMMSHKPLHSPNSSKSPSHKDQDFPSK 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium737g00001 386 MobiDBLite consensus disorder prediction 44 68 - -
Vium737g00001 386 MobiDBLite consensus disorder prediction 215 237 - -
Vium737g00001 386 MobiDBLite consensus disorder prediction 363 378 - -
Vium737g00001 386 Pfam TCP family transcription factor 84 212 IPR017887 -
Vium737g00001 386 ProSiteProfiles TCP domain profile. 84 142 IPR017887 -
Vium737g00001 386 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 344 IPR005333 GO:0003700
Vium737g00001 386 MobiDBLite consensus disorder prediction 363 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium737g00001 Vium-Chr737 8716 10861 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium737g00001 67 156 TCP Transcription Factor Family AT3G02150 82.222 3.34e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vium737g00001 TCP 2.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium737g00001 - - var:108327895 751.125