Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7377g00002 ATGAGTTGGATTCATTCTCAAATCTGCCATAGTAGTGATGCTATCAACAACCCCACTAGTATTTCCACATCTTCTTGTTCTTCTACTGCACCATTGTCTTACAGTTCTGAGTACAAGAAACAACTACCCCCTCCTCTATCTTCTTCATCTGGAACTAGAATAAGCCCTGCAATTGTTTTCATCTTTGTCATTCTAGCTATTGTGTTTTTCATCTCTGGTCTCCTTCACTTGCTTGTTAGATTCCTTATAAGGCACATGTCCTCTTCGTCAATTTCCCAGTCCAATAGGTACCCTGACATGTCGGAATCTGATCCTTACCAGAGGCAGTTACAGCAGCTCTTCCATCTCCATGATTCAGGCCTAGATCAGGCCTTCATAGATGCTCTACCAGTTTTCCTGTACAAAGACATAATAGGTTTGAAGGAGCCTTTTGATTGTGCAGTGTGCCTTTGCCAGTTCTCAGAACAGGACATGCTGAGGTTGTTGCCCCTTTGCAACCATGCTTTTCACATTGATTGCATAGACACATGGCTGCTCTCAAATTCAACTTGCCCTCTCTGCCGAGGGAGTCTTTATGAGCCAGGCTTTGCCTTTGAAAACCCAGTTTATGAGTTTGAGGGTCTGAGGGAGGAAGATGGGGTTTCAGGCAGTGTTGCTGCAGAGGCTGGTTCCTTCAACAAACATGCAGAAAATCACATAATGAGTGGGAAAAGGGTGTTTTCTGTGAGGCTTGGGAAGTTTAGAAGCTCAAATAATGGAGAGGGGGTAGAAAGAGGAGGAGGAGGGGAGAGCAGTACAAGTAACTTGGATGTTAGAAGATGCTATTCAATGGGGTCCTTCCAATATGTTGTTGCTGATTCAGATTTGCAAGTGGCTTTGTGCCCCAATAGAGGTGATGGTGGAGGTGTCAGTGGTGGCAGTGTGAGACAATTCAAAGGTAGATTGGACCATTGTGGGAATTCTTCCACTGAAGGGGATGTTGAGGGCAAAAAAATCAAAATTGCAAGGAAAGGTGAAAGCTTTTCTGTTTCCAAGATCTGGCAATGGTCTAGGAAGGACAAGGTATCAAGTTCACCACAAAACCATTTGGGTGGTTCTTATGTCAGTGCAGCTTTGCCATGGATGAATAGAGCTCAAGAAGCTGTCCTTTTTGGTGGGTTTAGCATTTGA 1170 0.4419 MSWIHSQICHSSDAINNPTSISTSSCSSTAPLSYSSEYKKQLPPPLSSSSGTRISPAIVFIFVILAIVFFISGLLHLLVRFLIRHMSSSSISQSNRYPDMSESDPYQRQLQQLFHLHDSGLDQAFIDALPVFLYKDIIGLKEPFDCAVCLCQFSEQDMLRLLPLCNHAFHIDCIDTWLLSNSTCPLCRGSLYEPGFAFENPVYEFEGLREEDGVSGSVAAEAGSFNKHAENHIMSGKRVFSVRLGKFRSSNNGEGVERGGGGESSTSNLDVRRCYSMGSFQYVVADSDLQVALCPNRGDGGGVSGGSVRQFKGRLDHCGNSSTEGDVEGKKIKIARKGESFSVSKIWQWSRKDKVSSSPQNHLGGSYVSAALPWMNRAQEAVLFGGFSI 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7377g00002 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 107 193 IPR013083 -
Vium7377g00002 389 ProSiteProfiles Zinc finger RING-type profile. 146 188 IPR001841 -
Vium7377g00002 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 49 347 - -
Vium7377g00002 389 SMART ring_2 146 187 IPR001841 -
Vium7377g00002 389 FunFam RING-H2 finger protein ATL46 108 193 - -
Vium7377g00002 389 SUPERFAMILY RING/U-box 125 194 - -
Vium7377g00002 389 CDD RING-H2_EL5-like 145 188 - -
Vium7377g00002 389 Pfam Ring finger domain 145 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7377g00002 Vium-Chr7377 69801 72271 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7377g00002 48 354 C3H Transcription Factor Family AT2G18650 39.701 3.78e-55 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7377g00002 - - gmx:100818135 581.637