Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7376g00002 ATGTGTATTTCAGTATTGATATACAAGACCAAACAACACTATGAAGCCTCCCACACATCAAGAGGAGAAATGGATACGAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAGGAAATCATTGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGTAAACTTCCAGAAGGAAAATCTGTAGCTGTCAAAGTTCGTTTTGACAGATCTCAACTGGGTGCTGATTCATTCATCAATGAGGTTAATCTTTTATCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTGCCTGGGGGATCCCTGGCTGATCATCTCTATGGTTGTCAAAAAATTTCCTTAAGCTGGGTGAGAAGGCTGAAAATTGCTGTTGATGCAGCAAAAGGTTTGGACTATTTGCACAATGGAAGTGAACCAAGAATCATACATCGTGATGTGAAGTGCAGTAACATCCTCTTGGACATGGAAATGAATGGCAAGGTCTGTGACTTAGGTCTCTCTAAGCAAGTAACTCAAGCAGATGCAACTCATGTCACCACTGTTGTTAAGGGCACTGCTGGTTACCTTGATCCAGAGTATTATTCCACTCAACAGTTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGGAGAGAGCCATTGACTCACTCTGGAAACCCTGATTCATTCAACTTGGTGTTATGGGCCAAACCATACTTGCAGGCTGGTGCATATGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAAGAAAGCAGCTTTCATTGCTATAGAGTCAGTGCACAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTGACAGAGCTAAAGGAAGCCTACGATATTCAGCTCAGATTCCTTGAATCAT 982 0.4073 MCISVLIYKTKQHYEASHTSRGEMDTRNWGAAKVFSYKEIKVATRNFKEIIGKGSFGSVYLGKLPEGKSVAVKVRFDRSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGCQKISLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNGKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAYEIVDEDIRGSFDPLSMKKAAFIAIESVHRDASQRPSIAEVLTELKEAYDIQLRFLES 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7376g00002 327 CDD STKc_IRAK 51 316 - -
Vium7376g00002 327 ProSiteProfiles Protein kinase domain profile. 45 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7376g00002 327 SUPERFAMILY Protein kinase-like (PK-like) 19 312 IPR011009 -
Vium7376g00002 327 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 121 324 - -
Vium7376g00002 327 FunFam serine/threonine-protein kinase PBS1-like 12 120 - -
Vium7376g00002 327 Gene3D Phosphorylase Kinase; domain 1 17 120 - -
Vium7376g00002 327 Gene3D Transferase(Phosphotransferase) domain 1 121 323 - -
Vium7376g00002 327 PANTHER OS01G0750732 PROTEIN 16 319 - -
Vium7376g00002 327 ProSitePatterns Protein kinases ATP-binding region signature. 51 73 IPR017441 GO:0005524
Vium7376g00002 327 SMART serkin_6 45 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7376g00002 327 Pfam Protein tyrosine and serine/threonine kinase 47 313 IPR001245 GO:0004672|GO:0006468
Vium7376g00002 327 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7376g00002 Vium-Chr7376 17981 21651 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7376g00002 7 325 Receptor kinase-like Gene Family AT5G48740 75.078 4.75e-174 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium7376g00002 Pkinase 1.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7376g00002 - - vum:124845081 655.981