Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7376g00001 ATGGACTTGAGGGACGCAAAAGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCTGAACAAGATGGTTTCTTTAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTACGTAACCACAGGAAAGACTACTACCATCACATACAGTGATGGTTCCAACTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCTAGAAGGCGAAAATGTTACAGAATACCAGTGAACAATTCAACTACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCAGCCGCCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTTTATGGACAGTCAACATGGATACACTGTCATTCTGCTTAATTGCAATGCCTGAAGGGGCTTCACCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGGGAGCCTACACAAATGGTATGACAGATTTTCCTAACAAGTTGCTTAAGAAGAGTTATAGAATTGATTGTGGGCACTCAAAGGATTCCATAAGGTATCCTTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCTAGTCTTGTAGAAGAACCACCAGTTGTTGTTCTTCAAACTGGGAGAGTTTTGGCAAGAAGTAATACTCTGACATACAACCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCTGTCTTCCCCTCATTTGATGTTCTTATAAATGGAGAACTAGTAAAATCAAACTACAAAATAAATGGCTCTGAAACCAGTGCTTTATACATAACGCGAAGGGGAATTGGGAGCTTGAATATAACATTAAAGAGTATCAGCTTTTATCCTCAGATCAATGCATTTGAGGTTTATAAGATGGTTGATATTCCAAATGATGCTTCATCAACCACAGTTTCAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGTCTGCCTTCCCCATGGGAGAAAATTCACTGTGAAGGAAGCCTTGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCCATTAGTCCTACATTTGGTGACTTGTTAGACCTCAAAATATTGGATTTGCACAACACATCACTTACTGGTGAAATACAGAATTTGGATGGCTTGCAGCATCTTGAGAAACTGAACTTAAGTTTCAATCAGTTAACATCTATTGGTGCAGACCTCCAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTTTAATGGGAACAGTACCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCTCTGCCACAGTCTTTGAACAAAGAAACATTGGAGATCAGGTATACAATAAATATTCTTGTCTCAAGAAACAGCATTTATGTTAATTCCTTGATCATTTGCAGGACATCTGTAAAAGAGATAACAGGCATCGGTTTTCATGACTCCATGGACTTGAGGGACGCAAAAGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCTGAACAAGATGGTTTCTTTAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTACGTAACCACAGGAAAGACTACTACCATCACATACAGTGATGGTTCCAACTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCTAGAAGGCGAAAATGTTACAGAATACCAGTGAACAATTCAACTACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCAGCCGCCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTTTATGGACAGTCAACATGGATACACTGTCATTCTGCTTAATTGCAATGCCTGAAGGGGCTTCACCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGGGAGCCTACACAAATGGTATGACAGATTTTCCTAACAAGTTGCTTAAGAAGAGTTATAGAATTGATTGTGGGCACTCAAAGGATTCCATAAGGTATCCTTTGGATCCATTTGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCTAGTCTTGTAGAAGAACCACCAGTTGTTGTTCTTCAAACTGGGAGAGTTTTGGCAAGAAGTAATACTCTGACATACAACCTCCCTCTTGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCTGTCTTCCCCTCATTTGATGTTCTTATAAATGGAGAACTAGTAAAATCAAACTACAAAATAAATGGATCTGAAACCAGTGCTTTATACATAACGCGAAAGGGAATTGGGAGCTTGAATATAACATTAAAGAGTATCAGCTTTTATCCTCAGATCAATGCATTTGAGGTTTATAAGATGGTTGATATTCCAAATGATGCATCATCAACCACAGTTTCAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGTCTGCCTTCCCCATGGGAGAAAATTCACTGTGAAGGAAGCCTTGTTACATCATTGGATCTTTCAGACATAAATTTGAGATCCATTAGTCCTACATTTGGTGACTTGTTAGACCTCAAAATATTGGATTTGCACAACACATCACTTACTGGTGAAATACAGAATTTGGATGGCTTGCAGCATCTTGAGAAACTGAACTTAAGTTTCAATCAGTTAACATCTATTGGTGCAGACCTCCAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTTTAATGGGAACAGTACCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAATCTGGAAAACAACAAACTACAAGGTCCTCTGCCACAGTCTTTGAACAAAGAAACATTGGAGATCAGGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTAATGATGATGCATCATCATCCAATCCTCCAATTGAAGCACCACAAGTTACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACAATCTAGCAATCATACTAGCCACGGTTGGAGGAGCCATAATAGCCTTTCTCTTAATGTGTATTTCAGTATTGATATACAAGACCAAACAACACTATGAAGCCTCCCACACATCAAGAGGAGAAATGGATACAAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAGGAAATCATAGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGTAAACTTCCAGAAGGAAAATCTGTAGCTGTCAAAGTTCGTTTTGACAGATCTCAACTGGGTGCTGATTCATTCATCAATGAGGTTAATCTTTTATCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGATTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTGCCTGGGGGATCCCTGGCTGATCATCTCTATGGTTGTCAAAAAATTTCCTTAAGCTGGGTGAGAAGGCTGAAAATTGCTGTTGATGCAGCAAAAGGTTTGGACTATTTGCACAATGGAAGTGAACCAAGAATCATACATCGTGATGTGAAGTGCAGTAACATCCTCTTGGACATGGAAATGAATGGCAAGGTCTGTGACTTAGGTCTCTCTAAGCAAGTAACTCAAGCAGATGCAACTCATGTCACCACTGTTGTTAAGGGCACTGCTGGTTACCTTGATCCAGAGTATTATTCCACTCAACAGTTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAAACCCTGATTCATTCAACTTGGTGTTATGGGCCAAACCATACTTGCAGGCTGGTGCATATGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAAGAAAGCAGCTTTCATTGCTATAGAGTCAGTGCACAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTGACAGAGCTAAAGGAAGCCTACGATATTCAGCTCAGATTCCTTGAATCATCAATCTAA 4347 0.3984 MDLRDAKVGFFLFCSFCLVTFSEQDGFFSLSCGGRTSFRDSSNISWVPDTTYVTTGKTTTITYSDGSNSLNISARFFPNSRRRKCYRIPVNNSTTLVLVRAKFVYKNYDGLGKPPKFYVSIGTSIAAAINLAEDDPWSEEFLWTVNMDTLSFCLIAMPEGASPVISSLEIRPLPQGAYTNGMTDFPNKLLKKSYRIDCGHSKDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPVVVLQTGRVLARSNTLTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINGSETSALYITRRGIGSLNITLKSISFYPQINAFEVYKMVDIPNDASSTTVSALQVIQQSTGLDLGWQDDPCLPSPWEKIHCEGSLVTSLDLSDINLRSISPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHLEKLNLSFNQLTSIGADLQNLINLQILDLQNNSLMGTVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRYTINILVSRNSIYVNSLIICRTSVKEITGIGFHDSMDLRDAKVGFFLFCSFCLVTFSEQDGFFSLSCGGRTSFRDSSNISWVPDTTYVTTGKTTTITYSDGSNSLNISARFFPNSRRRKCYRIPVNNSTTLVLVRAKFVYKNYDGLGKPPKFYVSIGTSIAAAINLAEDDPWSEEFLWTVNMDTLSFCLIAMPEGASPVISSLEIRPLPQGAYTNGMTDFPNKLLKKSYRIDCGHSKDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPVVVLQTGRVLARSNTLTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINGSETSALYITRKGIGSLNITLKSISFYPQINAFEVYKMVDIPNDASSTTVSALQVIQQSTGLDLGWQDDPCLPSPWEKIHCEGSLVTSLDLSDINLRSISPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHLEKLNLSFNQLTSIGADLQNLINLQILDLQNNSLMGTVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCNDDASSSNPPIEAPQVTVVPQKKHNVHNNLAIILATVGGAIIAFLLMCISVLIYKTKQHYEASHTSRGEMDTRNWGAAKVFSYKEIKVATRNFKEIIGKGSFGSVYLGKLPEGKSVAVKVRFDRSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGCQKISLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNGKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAYEIVDEDIRGSFDPLSMKKAAFIAIESVHRDASQRPSIAEVLTELKEAYDIQLRFLESSI 1448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7376g00001 1448 Gene3D Ribonuclease Inhibitor 356 520 IPR032675 -
Vium7376g00001 1448 Gene3D Ribonuclease Inhibitor 903 1075 IPR032675 -
Vium7376g00001 1448 Pfam Leucine rich repeat 438 496 IPR001611 GO:0005515
Vium7376g00001 1448 Pfam Leucine rich repeat 985 1043 IPR001611 GO:0005515
Vium7376g00001 1448 ProSiteProfiles Protein kinase domain profile. 1164 1444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7376g00001 1448 Gene3D Transferase(Phosphotransferase) domain 1 1240 1443 - -
Vium7376g00001 1448 Gene3D Phosphorylase Kinase; domain 1 1137 1239 - -
Vium7376g00001 1448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1284 1296 IPR008271 GO:0004672|GO:0006468
Vium7376g00001 1448 CDD STKc_IRAK 1170 1435 - -
Vium7376g00001 1448 FunFam serine/threonine-protein kinase PBS1-like 1131 1239 - -
Vium7376g00001 1448 Gene3D - 738 894 - -
Vium7376g00001 1448 Gene3D - 191 347 - -
Vium7376g00001 1448 PANTHER OS07G0107800 PROTEIN-RELATED 451 507 - -
Vium7376g00001 1448 ProSitePatterns Protein kinases ATP-binding region signature. 1170 1192 IPR017441 GO:0005524
Vium7376g00001 1448 ProSiteProfiles Leucine-rich repeat profile. 985 1007 IPR001611 GO:0005515
Vium7376g00001 1448 Pfam Protein tyrosine and serine/threonine kinase 1166 1432 IPR001245 GO:0004672|GO:0006468
Vium7376g00001 1448 SMART LRR_typ_2 436 458 IPR003591 -
Vium7376g00001 1448 SMART LRR_typ_2 983 1005 IPR003591 -
Vium7376g00001 1448 SMART LRR_typ_2 1006 1030 IPR003591 -
Vium7376g00001 1448 SMART LRR_typ_2 459 483 IPR003591 -
Vium7376g00001 1448 SMART serkin_6 1164 1437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7376g00001 1448 ProSiteProfiles Leucine-rich repeat profile. 438 460 IPR001611 GO:0005515
Vium7376g00001 1448 Pfam Malectin-like domain 30 345 IPR024788 -
Vium7376g00001 1448 Pfam Malectin-like domain 577 892 IPR024788 -
Vium7376g00001 1448 SUPERFAMILY Protein kinase-like (PK-like) 1139 1431 IPR011009 -
Vium7376g00001 1448 SUPERFAMILY L domain-like 905 1053 - -
Vium7376g00001 1448 SUPERFAMILY L domain-like 358 514 - -
Vium7376g00001 1448 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 1240 1440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7376g00001 Vium-Chr7376 4887 17862 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7376g00001 10 529 Receptor kinase-like Gene Family AT5G48740 55.577 1.32e-177 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vium7376g00001 Malectin_like 5.5e-53 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7376g00001 - - vum:124845082 2801.16