Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7375g00001 ATGGAGGACGCACAAGCTCGTAACAGTAATGATGGAGATGACAACGGTGGATCAGGAAGCAAACGTAAAGGTCCTGTTTTGAGGCGTGCCATGGCAACACATACGCAAGATGAAGCAATGGTGGGATCTTCACCTGCAACACCATGTGGGGCTTGCAAGTTCTTGAGGAGGAAGTGCATTGGAGGGTGCATCTTTGCACCCCACTTTGGCACAGACCAAGGTGCAGCCAAGTTTGCAGCTGTGCACAAGGTCTTTGGCGCTAGCAATGTCTCAAAGCTCTTGTCTAACATTCCGGCCAACCGCCGCCAAGAAGCAGCAACAACCATATCCTATGAGGCTCAGGCAAGGCTCTCCGATCCGGTTTACGGTTGTGTCTCCACCATCCTTGCTCTGCAACAACAGGTAGCATCTCTACAAGCAGAGCTAGCTATGTTGCAAACTCAGGTGATGAATAGTAAGTTGGCCTATGCAAGTGCTCTTCACACAACACAACTACAGCAACCAAACATGAATGCAGGAGCACTACAACCAGCATATTCTAACAACTCATGTGCTTCCACCAACCTTATGAACTTGAGCAGCTTCAACAATAACCCTGCTGCCTTTGACCTTGCAATGGACACAGCACCCTCATCAAACACTTTAGAGCCTCTTCAACTCACAAGACTGTCCAAATGTGAAGAAGAAGATGAAGAAGAAAGCAGGACTCAGCTAGCCTTCAACCACCATTAA 732 0.4836 MEDAQARNSNDGDDNGGSGSKRKGPVLRRAMATHTQDEAMVGSSPATPCGACKFLRRKCIGGCIFAPHFGTDQGAAKFAAVHKVFGASNVSKLLSNIPANRRQEAATTISYEAQARLSDPVYGCVSTILALQQQVASLQAELAMLQTQVMNSKLAYASALHTTQLQQPNMNAGALQPAYSNNSCASTNLMNLSSFNNNPAAFDLAMDTAPSSNTLEPLQLTRLSKCEEEDEEESRTQLAFNHH 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7375g00001 243 Coils Coil 128 148 - -
Vium7375g00001 243 MobiDBLite consensus disorder prediction 224 243 - -
Vium7375g00001 243 MobiDBLite consensus disorder prediction 1 25 - -
Vium7375g00001 243 Pfam Lateral organ boundaries (LOB) domain 48 146 IPR004883 -
Vium7375g00001 243 ProSiteProfiles LOB domain profile. 47 149 IPR004883 -
Vium7375g00001 243 PANTHER LOB DOMAIN CONTAINING PROTEIN 46 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7375g00001 Vium-Chr7375 2431 9334 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7375g00001 47 234 AS2 family AT3G03760 59.898 2.48e-71 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium7375g00001 LOB 7.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7375g00001 - - gmx:100813769 370.163