Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7370g00003 ATGGTTTCGCTTCATCCACTTGTGTGTCCTTTGTCAGTTTCCTCTTCCTCCTCTGAATTTTTTAGATGCTCCCTTTGGTCTAGCTGCTACCGGTCCGCAAGTTTTGCCCCAAAACGAAGAAACAGCTCCAAAACAGAGCAGCGTTCTTTCATCCGCAATGCTTCGTGGCAAGAGCTCGCCGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCTCTAGGAGAGTCGCTTCAGAGGAAAATGGAGGAGGAGAAGAAATCTGCTGAAAAAAATTCGTCTAAATTCAAGGCATTAGCCGACAAGGCCCGAAAGGAGAGCTGTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATATCATATGAATACCCATCATATCTTACTGGGGACTTGCCTGGGGATTACGGCTTTGACATTGCGGGGCTAGGCAAGGATCCTGTGGCGCTGCGTAAATACTTCAATTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTATTGGAGCTCTGATTCCAGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTGGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTTTGGATTACCTTGGCATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCAGAATACGCTAGGTATTGTGGGACTGAGGCATTGGAGCCTCTAGGAATATATCTGCCCGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCACGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATTAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAAGCAGCACTGACGGGTAAAGGTCCAGTTCAGAACCTTATTGATTTCATTTCGGATCCTTTCCACAACAACTTTCTGAACTCCCTCAACATTATGAAATTCGTCATATGA 1029 0.4577 MVSLHPLVCPLSVSSSSSEFFRCSLWSSCYRSASFAPKRRNSSKTEQRSFIRNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEEEKKSAEKNSSKFKALADKARKESCWYGEDRPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALRKYFNFEILHARWAMLASIGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGTEALEPLGIYLPGDINYPGGALFDPLNLSNDHEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDFISDPFHNNFLNSLNIMKFVI 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7370g00003 342 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 90 333 IPR001344 GO:0009765|GO:0016020
Vium7370g00003 342 Coils Coil 93 113 - -
Vium7370g00003 342 FunFam Chlorophyll a-b binding protein, chloroplastic 123 335 - -
Vium7370g00003 342 Gene3D Chlorophyll a/b binding protein domain 123 334 - -
Vium7370g00003 342 Pfam Chlorophyll A-B binding protein 133 308 IPR022796 -
Vium7370g00003 342 SUPERFAMILY Chlorophyll a-b binding protein 114 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7370g00003 Vium-Chr7370 11453 21896 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7370g00003 39 336 Chloroplast and Mitochondria Gene Families AT1G76570 75.839 5.08e-171 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7370g00003 K14172 - gmx:100786260 545.814