Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7370g00002 ATGGTTTCGCTTCATCCACTTGTGTGTCCTTTGTCAGTTTCCTCTTCCTCCTCTGAATTTTTTAGATGCTCCCTTTGGTCTAGCTGCTACCGGTCCGCAAGTTTTGCCCCAAAACGAAGAAACAGCTCCAAAACAGAGCAGCGTTCTTTCATCCGCAATGCTTCGTGGCAAGAGCTCGCCGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCTCTAGGAGAGTCGCTTCAGAGGAAAATGGAGGAGGAGAAGAAATCTGCTGAAAAAAATTCGTCTAAATTCAAGGCATTAGCCGACAAGGCCCGAAAGGAGAGCTGTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATATCATATGAATACCCATCATATCTTACTGGGGACTTGCCTGGGGATTACGGCTTTGACATTGCGGGGCTAGGCAAGGATCCTGTGGCGCTGCGTAAATACTTCAAGTATGTTATATTTAATATTTTAATGGAAGCCATTATGCATGTGTTGCTGCTGCTTGTCATTTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTATTGGAGCTCTGATTCCAGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTGGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTTTGGATTACCTTGGCATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGAGATTCTTAAACAGGTTGGACCAGAATACGCTAGGTATTGTGGGACTGAGGCATTGGAGCCTCTAG 840 0.4595 MVSLHPLVCPLSVSSSSSEFFRCSLWSSCYRSASFAPKRRNSSKTEQRSFIRNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEEEKKSAEKNSSKFKALADKARKESCWYGEDRPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALRKYFKYVIFNILMEAIMHVLLLLVIFEILHARWAMLASIGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMRFLNRLDQNTLGIVGLRHWSL 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7370g00002 279 SUPERFAMILY Chlorophyll a-b binding protein 114 255 - -
Vium7370g00002 279 Coils Coil 93 113 - -
Vium7370g00002 279 Pfam Chlorophyll A-B binding protein 133 260 IPR022796 -
Vium7370g00002 279 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 90 262 IPR001344 GO:0009765|GO:0016020
Vium7370g00002 279 Gene3D Chlorophyll a/b binding protein domain 123 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7370g00002 Vium-Chr7370 11452 21573 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7370g00002 39 258 Chloroplast and Mitochondria Gene Families AT1G76570 65.455 2.28e-99 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7370g00002 K14172 - gmx:100786260 338.576