Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7370g00001 ATGGTTTCGCTTCATCCACTTGTGTGTCCTTTGTCAGTTTCCTCTTCCTCCTCTGAATTTTTTAGATGCTCCCTTTGGTCTAGCTGCTACCGGTCCGCAAGTTTTGCCCCAAAACGAAGAAACAGCTCCAAAACAGAGCAGCGTTCTTTCATCCGCAATGCTTCGTGGCAAGAGCTCGCCGGAGTTTTACTATTCTCAGCGATTCCTTTCACTGCCGTGAAAGCCATAGCTAATAGTCCTCTAGGAGAGTCGCTTCAGAGGAAAATGGAGGAGGAGAAGAAATCTGCTGAAAAAAATTCGTCTAAATTCAAGGCATTAGCCGACAAGGCCCGAAAGGAGAGCTGTTGGTATGGAGAAGATCGGCCTCGTTGGCTTGGTCCTATATCATATGAATACCCATCATATCTTACTGGGGACTTGCCTGGGGATTACGGCTTTGACATTGCGGGGCTAGGCAAGGATCCTGTGGCGCTGCGTAAATACTTCAAGTATGTTATATTTAATATTTTAATGGAAGCCATTATGCATGTGTTGCTGCTGCTTGTCATTTTTGAGATATTGCATGCTCGGTGGGCTATGCTTGCATCTATTGGAGCTCTGATTCCAGAAATATTAGACCTATTGGGAGCCTTTCACTTTGTGGAACCTGTGTGGTGGCGTGTTGGTTATTCAAAGCTCAAGGGAGATACTTTGGATTACCTTGGCATCCAAGGTCTTCACTTTGCTGGAAGTCAGGGAGTGGTCGTGATTGCTATTTGCCAAGCACTCCTTATGGTTGGACCAGAATACGCTAGGTATTGTGGGACTGAGGCATTGGAGCCTCTAGGAATATATCTGCCCGGTGATATAAATTATCCTGGAGGAGCTTTGTTTGATCCCTTGAATCTGTCCAACGATCACGAAGCTTTTGAAGAGCTGAAGGTAAAAGAAATTAAAAATGGACGCTTGGCAATGGTTGCCTGGTTAGGCTTTTACGTGCAAGCAGCACTGACGGGTAAAGGTCCAGTTCAGAACCTTATTGATTTCATTTCGGATCCTTTCCACAACAACTTTCTGAACTCCCTCAACATTATGAAATTCGTCATATGA 1089 0.45 MVSLHPLVCPLSVSSSSSEFFRCSLWSSCYRSASFAPKRRNSSKTEQRSFIRNASWQELAGVLLFSAIPFTAVKAIANSPLGESLQRKMEEEKKSAEKNSSKFKALADKARKESCWYGEDRPRWLGPISYEYPSYLTGDLPGDYGFDIAGLGKDPVALRKYFKYVIFNILMEAIMHVLLLLVIFEILHARWAMLASIGALIPEILDLLGAFHFVEPVWWRVGYSKLKGDTLDYLGIQGLHFAGSQGVVVIAICQALLMVGPEYARYCGTEALEPLGIYLPGDINYPGGALFDPLNLSNDHEAFEELKVKEIKNGRLAMVAWLGFYVQAALTGKGPVQNLIDFISDPFHNNFLNSLNIMKFVI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7370g00001 362 Coils Coil 93 113 - -
Vium7370g00001 362 Pfam Chlorophyll A-B binding protein 133 328 IPR022796 -
Vium7370g00001 362 SUPERFAMILY Chlorophyll a-b binding protein 114 354 - -
Vium7370g00001 362 Gene3D Chlorophyll a/b binding protein domain 123 354 - -
Vium7370g00001 362 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 90 353 IPR001344 GO:0009765|GO:0016020
Vium7370g00001 362 FunFam Chlorophyll a-b binding protein, chloroplastic 123 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7370g00001 Vium-Chr7370 11452 21896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7370g00001 39 356 Chloroplast and Mitochondria Gene Families AT1G76570 70.755 3.90e-165 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7370g00001 K14172 - gmx:100786260 531.561