Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7366g00001 ATGAACTGTTCGTCGACTCAACTAGTCCTCGCGAAAAGGATGGGTATATATGATCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTCAAAATTGATGGAAGCTTGAATTCAATTGCTACACCAATGTTCATGATGAAGCCAAGCATGCAGAACAAGCCTGAATGTACTCCTTATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGAGTAATGAGAAAACTGATAGTAAGGTTCTAAGACGTCAAGCTCAAAATCGTGAGGCTGCACGAAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAACAATTAGAAACAAGCCGTGTGAAGCTCATGCAATTGGAATTGGAGATTGAGAAAGCAAAAAAGCAGGGTATGTACATACGGAGTGCACCAGATGTTAGTTATATGGGATCATCCGGAACAATTAACCCAGGGATAGCCTTGTTTGAACTTGAATATGGACAATGGATTGAAGAGCTCGATAGACAGAATGAAGAACTGAGAAATGCATTACACACTCGTGACTCTGATATGCAGCTTCATCTACTTGTTGAGAGTTGCTTGAGCCACTACTCAAATCTTTTCAGGATGAAAGCAGAGGCAGCAAAAGCAGATGTCTTTTATATGATCTCTGGCACATGGAAAGCATCAGTGGAACGCCTTTATCTTTGGATTGGAGGATCCCGTCCATCACAGCTTCTAAATATAATTGTACCACAGCTTGAGCCTTTGACTGATCAACAAATTGTGAGTATTAACAAGCTCCGGCTTTCATCTCAGCAAGCTGAAGATTCCCTTTCACTTGGATTGGACAAACTCCAGCAGAGTCTAGTCCACAACATTCCATCAGATCCCGTAGCTATAGGACACTACGGCTTTGAGATGGCTGCTGCAATGGACAAGGGTGAAGCACTAGAAGGTTTTGTAAACCAGGCAGACCACCTTAGGCAGCAAACTCTGCTCTACATGTCAAGGATTCTGACACCTGGGCAAACTGCTCAAGGCTTGGTGGCTATGGGGGAATACTTCCATCGTCTTCGAACTCTTAGTTCTTTATGGAGTGCTCATTCATGTGATCCTTCCTTTCCCACTCACCTCTCAAACTGA 1110 0.4369 MNCSSTQLVLAKRMGIYDPFHQVNMWGDSFKIDGSLNSIATPMFMMKPSMQNKPECTPYESREPSGDDQESNEKTDSKVLRRQAQNREAARKCRLRKKAYVQQLETSRVKLMQLELEIEKAKKQGMYIRSAPDVSYMGSSGTINPGIALFELEYGQWIEELDRQNEELRNALHTRDSDMQLHLLVESCLSHYSNLFRMKAEAAKADVFYMISGTWKASVERLYLWIGGSRPSQLLNIIVPQLEPLTDQQIVSINKLRLSSQQAEDSLSLGLDKLQQSLVHNIPSDPVAIGHYGFEMAAAMDKGEALEGFVNQADHLRQQTLLYMSRILTPGQTAQGLVAMGEYFHRLRTLSSLWSAHSCDPSFPTHLSN 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7366g00001 369 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 76 111 IPR004827 GO:0003700|GO:0006355
Vium7366g00001 369 PANTHER TRANSCRIPTION FACTOR TGA9 7 358 - -
Vium7366g00001 369 Coils Coil 158 178 - -
Vium7366g00001 369 ProSiteProfiles DOG1 domain profile. 147 357 IPR025422 GO:0006351|GO:0043565
Vium7366g00001 369 Pfam bZIP transcription factor 77 113 IPR004827 GO:0003700|GO:0006355
Vium7366g00001 369 MobiDBLite consensus disorder prediction 48 90 - -
Vium7366g00001 369 FunFam BZIP family transcription factor 77 126 - -
Vium7366g00001 369 Gene3D - 77 129 - -
Vium7366g00001 369 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 81 96 IPR004827 GO:0003700|GO:0006355
Vium7366g00001 369 MobiDBLite consensus disorder prediction 60 90 - -
Vium7366g00001 369 SUPERFAMILY Leucine zipper domain 79 111 IPR046347 GO:0003700|GO:0006355
Vium7366g00001 369 SMART brlzneu 73 134 IPR004827 GO:0003700|GO:0006355
Vium7366g00001 369 Coils Coil 97 124 - -
Vium7366g00001 369 Pfam Seed dormancy control 166 239 IPR025422 GO:0006351|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7366g00001 Vium-Chr7366 10696 14584 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7366g00001 2 362 Calmodulin-binding Proteins AT1G77920 52.800 3.57e-132 381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium7366g00001 DOG1 1.2e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7366g00001 K14431 - gmx:100526976 649.432