Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7362g00001 ATGGGGAAGGGAACAGGGAGTTTCGGTAAGAGGAGGAACAAGACCCACACCCTCTGTGTCAGATGCGGCCGTCGCAGCTTCCACCTCCAGAAGAGTCGCTGTGCTGCGTGTGCTTTCCCAGCAGCACGCACTAGAAAATATAACTGGAGCGTCAAGGCCATTAGGAGAAAGACCACTGGAACTGGAAGAATGAGGTATCTGCGTCACGTGCCTCGCAGATTCAAGAGCGGCTTCAGAGAGGGTACCGAAGCTGCACCCAGGAAGAGAGGAGCGGCTACCACTGCCTAA 288 0.5556 MGKGTGSFGKRRNKTHTLCVRCGRRSFHLQKSRCAACAFPAARTRKYNWSVKAIRRKTTGTGRMRYLRHVPRRFKSGFREGTEAAPRKRGAATTA 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7362g00001 95 Hamap 50S ribosomal protein L37e [rpl37e]. 2 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vium7362g00001 95 Pfam Ribosomal protein L37e 3 53 IPR001569 GO:0003735|GO:0005840|GO:0006412
Vium7362g00001 95 Gene3D - 1 87 IPR011331 GO:0003735|GO:0005840|GO:0006412
Vium7362g00001 95 PANTHER 60S RIBOSOMAL PROTEIN L37 1 93 - -
Vium7362g00001 95 MobiDBLite consensus disorder prediction 71 95 - -
Vium7362g00001 95 ProSitePatterns Ribosomal protein L37e signature. 4 23 IPR018267 GO:0003735|GO:0005840|GO:0006412
Vium7362g00001 95 SUPERFAMILY Zn-binding ribosomal proteins 1 55 IPR011332 GO:0006412
Vium7362g00001 95 FunFam Ribosomal protein L37 1 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7362g00001 Vium-Chr7362 22156 22961 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7362g00001 1 95 Cytoplasmic Ribosomal Protein Gene Family AT1G52300 84.211 3.13e-56 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7362g00001 K02922 - gmx:100306503 197.208