Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium735g00002 ATGCAACCAACATCGAACGGCTCTGATTCGCAACCCACGGAGCAGAACCAGCAGACGCCGCCCCCGCCGCCACCGCCGCAGCCTGTGCCCGTACCGCCGCAGTGGCTCCCGATGCAGTACCCAGCGGCTGCCATGGTAATGCAGCACCACATGATGCCGCCTCAACATTATGCCGCGCCGCCGCCGCCTCCGCAGCCCTATGTCGCCTATCACCAGTACCAGCAGCAGCTCTCGCACGTGTCGCACGCGCACCATCAGGGATCCAGCGTCGAGAACAAGACCGTATGGGTCGGCGATTTGCATCACTGGATGGATGAAAATTATCTCCACCGCTGTTTCGCTTCTACCGGCGAGATTTCCTCCATTAAGGTTATTCGAAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTTGAATTCTATTCGCATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTGAACTGGGCATCATTTAGCACAGGAGACAAGCGTTCAGATAATGTCCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACTTTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATAATGAGAGGTCTCAGGCTATGACTGAAATGAATGGAGTTTACTGCTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCAAGGAAAACGTCTGGCTATCAACAAGGAAGTCAGTCCAATGGCACATCCAACCAATCTGAAGCTGATTCTACGAACACAACTATATTTGTCGGAGGTCTTGACCCCAATGTTACTGCTGAAGATCTTAGGCAGCCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTTGGAAAAGGATGTGGTTTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACTATAGGCAAGCAAATGGTTCGTCTTTCGTGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGGAGATTTCGGGAGTCCTTGGAATGGGGCATATTACGGGGGAGCTGTTTATGATGGTTATGGGTATGCTTTACCAGCTCCTCATGATCCCAGTATCTATGCTGCTGCTTATGGGGCATACCCTATTTATGGAGGACACCAGCAGCAAGTAAGTTAA 1266 0.4842 MQPTSNGSDSQPTEQNQQTPPPPPPPQPVPVPPQWLPMQYPAAAMVMQHHMMPPQHYAAPPPPPQPYVAYHQYQQQLSHVSHAHHQGSSVENKTVWVGDLHHWMDENYLHRCFASTGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWASFSTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGTSNQSEADSTNTTIFVGGLDPNVTAEDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRGDFGSPWNGAYYGGAVYDGYGYALPAPHDPSIYAAAYGAYPIYGGHQQQVS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium735g00002 421 MobiDBLite consensus disorder prediction 1 15 - -
Vium735g00002 421 SUPERFAMILY RNA-binding domain, RBD 281 391 IPR035979 GO:0003676
Vium735g00002 421 FunFam Polyadenylate-binding protein RBP47C isoform A 185 261 - -
Vium735g00002 421 CDD RRM3_NGR1_NAM8_like 290 361 - -
Vium735g00002 421 FunFam Polyadenylate-binding protein RBP47C isoform A 92 172 - -
Vium735g00002 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 291 363 IPR000504 GO:0003723
Vium735g00002 421 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 85 367 - -
Vium735g00002 421 MobiDBLite consensus disorder prediction 262 294 - -
Vium735g00002 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 93 173 IPR000504 GO:0003723
Vium735g00002 421 Gene3D - 92 172 IPR012677 -
Vium735g00002 421 CDD RRM2_SECp43_like 185 264 - -
Vium735g00002 421 SMART rrm1_1 187 261 IPR000504 GO:0003723
Vium735g00002 421 SMART rrm1_1 94 169 IPR000504 GO:0003723
Vium735g00002 421 SMART rrm1_1 292 359 IPR000504 GO:0003723
Vium735g00002 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 257 IPR000504 GO:0003723
Vium735g00002 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 293 354 IPR000504 GO:0003723
Vium735g00002 421 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 95 162 IPR000504 GO:0003723
Vium735g00002 421 CDD RRM1_SECp43_like 94 174 - -
Vium735g00002 421 Gene3D - 173 275 IPR012677 -
Vium735g00002 421 Gene3D - 276 393 IPR012677 -
Vium735g00002 421 SUPERFAMILY RNA-binding domain, RBD 61 174 IPR035979 GO:0003676
Vium735g00002 421 SUPERFAMILY RNA-binding domain, RBD 169 280 IPR035979 GO:0003676
Vium735g00002 421 MobiDBLite consensus disorder prediction 16 35 - -
Vium735g00002 421 MobiDBLite consensus disorder prediction 266 294 - -
Vium735g00002 421 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 265 IPR000504 GO:0003723
Vium735g00002 421 MobiDBLite consensus disorder prediction 1 35 - -
Vium735g00002 421 FunFam Polyadenylate-binding protein RBP47 276 393 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium735g00002 Vium-Chr735 20372 27378 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium735g00002 95 370 Eukaryotic Initiation Factors Gene Family AT4G34110 28.622 1.55e-28 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium735g00002 - - gmx:100777830 687.952