Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7345g00003 ATGGCTCTGGTGGCGAACGAGGACTTCCAGCACATTCTCCGTGTGCTGAACACTAACGTTGATGGCAAGCAGAAGATAATGTTCGCCCTTACCTCCATCAAGGGTATTGGCAGGAGATTCGCCAACATGGTTTGCAAGAAGGCTGATGTTGACATGAACAAGAGGGCTGGTGAGTTGAGTGCTGCCGAGTTGGATAATCTGATGACAGTGGTAGCCAACCCTAGGCAATTCAAAATCCCAGACTGGTTTCTTAACAGGAAGAAGGATTACAAGGATGGCAAGTACTCCCAAGTTGTTTCCAATGCTCTCGATATGAAGCTCAGGGATGACTTGGAGAGACTCAAGAAAATCAGAAACCACCGTGGATTGAGGCACTACTGGGGCCTTAGAGTCCGTGGTCAGCACACCAAGACAACTGGCCGTAGGGGGAAGACTGTTGGTGTCTCTAAGAAGCGTTAA 459 0.4902 MALVANEDFQHILRVLNTNVDGKQKIMFALTSIKGIGRRFANMVCKKADVDMNKRAGELSAAELDNLMTVVANPRQFKIPDWFLNRKKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTTGRRGKTVGVSKKR 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7345g00003 152 SUPERFAMILY S13-like H2TH domain 13 148 IPR010979 GO:0003676
Vium7345g00003 152 FunFam 40S ribosomal protein S18 1 80 - -
Vium7345g00003 152 FunFam 40S ribosomal protein S18 92 143 - -
Vium7345g00003 152 PANTHER 30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18 3 152 - -
Vium7345g00003 152 Hamap 30S ribosomal protein S13 [rpsM]. 12 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium7345g00003 152 Gene3D - 1 80 - -
Vium7345g00003 152 ProSiteProfiles Ribosomal protein S13 family profile. 15 145 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium7345g00003 152 Pfam Ribosomal protein S13/S18 14 142 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium7345g00003 152 Gene3D 30s ribosomal protein s13, domain 2 92 142 IPR027437 -
Vium7345g00003 152 PIRSF RPS13p_RPS13a_RPS18e_RPS13o 5 152 IPR001892 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vium7345g00003 152 ProSitePatterns Ribosomal protein S13 signature. 121 134 IPR018269 GO:0003723|GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7345g00003 Vium-Chr7345 9879 11607 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7345g00003 1 152 Cytoplasmic Ribosomal Protein Gene Family AT4G09800 95.395 1.30e-108 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7345g00003 K02964 - qsu:112019340 299.286