Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium733g00003 ATGGAAGAAGGCAGTCATGAGAAGAAGAAGGAAGAAACCCTACCACCTGGTTTTCGGTTTCACCCCACAGATGAAGAACTAATTTGTTACTATCTCACAAACAAGATTTCAGATTCTGATTTTACAGCAAAAGCAATAGCTGTTGTAGATCTCAACAAATGTGAGCCATGGGATCTTCCTGGAAAGGCGAAAATGGGACAAAAAGAATGGTACTTCTTCAACCTAAGGGATCGTAAATATCCAACAGGTGTGAGAACAAACAGAGCAACGAACACAGGGTACTGGAAAACCACTGGAAAAGACAAAGAGATCTTGAACAGTGTTACATCGGAGTTGGTCGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAAATCACTAAGGTATTGCACCTAAACTTATTTATGACTAAGATACTCAATATTAAATTACCTAAGAAAATATTTTAA 519 0.3873 MEEGSHEKKKEETLPPGFRFHPTDEELICYYLTNKISDSDFTAKAIAVVDLNKCEPWDLPGKAKMGQKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKITKVLHLNLFMTKILNIKLPKKIF 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium733g00003 172 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 153 - -
Vium733g00003 172 Gene3D NAC domain 23 164 IPR036093 GO:0003677|GO:0006355
Vium733g00003 172 ProSiteProfiles NAC domain profile. 14 165 IPR003441 GO:0003677|GO:0006355
Vium733g00003 172 SUPERFAMILY NAC domain 10 147 IPR036093 GO:0003677|GO:0006355
Vium733g00003 172 FunFam NAC domain-containing protein 100-like 23 167 - -
Vium733g00003 172 Pfam No apical meristem (NAM) protein 15 141 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium733g00003 Vium-Chr733 44966 45886 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium733g00003 1 151 NAC Transcription Factor Family AT2G24430 81.046 3.78e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vium733g00003 NAM 2.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium733g00003 - - vum:124823064 362.073