Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium733g00001 ATGGGGGAATCCAGTTTTGTTAGCACCAATAACCTCTTTACAACTTGTCCCAAAAAATGTGATGAAGCTGCTCGTCTATCTGCAATGTTGCTTAGTACTACTGTGGTCTACCCTGCAGTTCTGAATGCTGCTATTCAACTCAACCTGTTTGAGATCATAGCCAAGGCAACACCACACGGTTCATTCCTCTCATCTCATGAAATTGCTTCTAAGCTCCCAAACCAGCATCCTGACTTGCCCAATAGGCTTGATCGCATGCTGCGTTTGCTTGCTAGTTATTCTGTTCTTACCACTTCAACACGCACCACACAACATGGTGCCACTGAGACAGTTTATGGACTCTCACAAATTGGACAATACTATGCCCCTGATGCAACTAGAGGCTACTTCGCTTCTTTTGCATCCTTTCTCTCTTGTCCTGCACTCTCACCTCTTTGGCTGAATTTCAAGGAAGCGGTGGTTGATGCAGACGTTGATTTGTTCAAGAAACTTCATGGGGTAACAACGTACCAGTACATGGAAAAGAATCCAAAAATGAACGAAATTTTTAACAAGTCTATGGCGGATTTGTGCGTAACAGATATGAATAGAATACTTGACATATATAATGGATTTGAGGGAATATCAACGTTGGTCGATGTAGGAGGTGGAAATGGACAAAACCTGAAAATGATAGTCTCCAAACACCCTTCAATGAAAGGAATTAATTTTGATCTGCACCAAGTCATTGAGAATGCACCACTGCTATCAGGGGTTGAGCATGTTGGAGGAGATATGTTTGCAAGTGTTCCAGAAGGTGACGCCATGACACTAAAGGCTGTCTTGCACAATTGGTCTGACGAGAAGTGCGTAGAAATATTGAGCAATTGTCACAAAGCACTGTCTGGAGATGGGAAGGTGGTTGTTCTGGAATTCATAATGCCAGAAGAACCAGAAGCAACTGAACAATCTCAGCTCGTTTCGAGCCTGGACAACCTTATGTTTATCACAGCAGGTGGAAAGGAAAGAACTGAGAAAGAGTACGAGAATTTGTGCAAGCTGGCTGGTTTTTCAAAATTTAATGTTGCTTGTCATGCGTCGTCTGGGCCGGGAGTGATGGAATTCTACAAATAG 1113 0.4304 MGESSFVSTNNLFTTCPKKCDEAARLSAMLLSTTVVYPAVLNAAIQLNLFEIIAKATPHGSFLSSHEIASKLPNQHPDLPNRLDRMLRLLASYSVLTTSTRTTQHGATETVYGLSQIGQYYAPDATRGYFASFASFLSCPALSPLWLNFKEAVVDADVDLFKKLHGVTTYQYMEKNPKMNEIFNKSMADLCVTDMNRILDIYNGFEGISTLVDVGGGNGQNLKMIVSKHPSMKGINFDLHQVIENAPLLSGVEHVGGDMFASVPEGDAMTLKAVLHNWSDEKCVEILSNCHKALSGDGKVVVLEFIMPEEPEATEQSQLVSSLDNLMFITAGGKERTEKEYENLCKLAGFSKFNVACHASSGPGVMEFYK 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium733g00001 370 FunFam Caffeic acid 3-O-methyltransferase 8 121 - -
Vium733g00001 370 Pfam O-methyltransferase domain 146 351 IPR001077 GO:0008171
Vium733g00001 370 SUPERFAMILY "Winged helix" DNA-binding domain 22 124 IPR036390 -
Vium733g00001 370 Gene3D - 6 121 IPR036388 -
Vium733g00001 370 Pfam Dimerisation domain 40 91 IPR012967 GO:0046983
Vium733g00001 370 PIRSF O-mtase 7 370 IPR016461 GO:0008168
Vium733g00001 370 FunFam Caffeic acid O-methyltransferase 124 370 - -
Vium733g00001 370 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 136 358 IPR029063 -
Vium733g00001 370 PANTHER O-METHYLTRANSFERASE 28 368 IPR016461 GO:0008168
Vium733g00001 370 Gene3D Vaccinia Virus protein VP39 123 370 IPR029063 -
Vium733g00001 370 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 29 370 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium733g00001 Vium-Chr733 14326 16145 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium733g00001 21 359 Monolignol Biosynthesis Gene Families AT5G54160 45.588 3.22e-103 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium733g00001 - - gmx:100787536 577.015