Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium732g00014 ATGAATGGTGCTGCATGTGTTGATGCAGAGTGCTGTGAGTTTGTGGAAGTTGATCCTACAGGAAGATATGGAAGATACAATGAAATTCTTGGCAAAGGAGCTTCCAAGACAGTCTATAAAGCATTTGATGAGTATGAAGGGATAGAAGTAGCATGGAATCAAGTAAAGCTTTATGACTTTTTGCAGAATCCTGAAGATCTTGAGAGGTTATACAGTGAAATCCATCTTCTCAAGACATTGAAACACAAGAACATCATGAAGTTCTATACTTCGTGGGTTGATACTGACAACAGACAAATCAATTTTGTCACCGAGATGTTTACCTCTGGGACTCTAAGACAGTACAGACTTAAGCACAGACGGGTTAACATCAGAGCTGTTAAGCATTGGTGTAGGCAGATTTTGGAAGGGCTTCTGTATCTGCACAGCCATAATCCTCCTGTGATCCACAGAGATCTCAAGTGTGATAACATTTTCATCAATGGCAACCAAGGGGAAGTCAAAATCGGTGATCTTGGCCTTGCTGCGATTCTCCGCAAATCTAATGCTGCTCGTTGTGTTGGCACCCCTGAGTTTATGGCTCCGGAAGTGTATGAAGAGGATTACAATGAGTTGGTTGACATATACTCTTTTGGAATGTGCATCTTAGAGATGGTCACTTTTGAATATCCTTATAGTGAATGCAACCATCCTGCTCAAATTTACAAGAAAGTTGTATCTGGGAAGAAGCCAGAAGCTCTTTACAAAGTAGTCAATCCAGAGGTAAGACAGTTTGTAGAGAAATGCTTAGCAACTGCGTCCCTCAGACTTTCAGCTAAGGAACTCTTGGAGGATCCTTTTCTGCAAATTGACGATTATGGATTTGACTCAAAAGTAGTGCAGTATCAAAGAGATTGCTATGAAGTAGCCCCATCAATCAGACAGCCTTTGAATGTAACGTATAGCATCAACACCTCAATGAGTGGGTACACTGATAATCTTGGTGGTTATGGGCCCTTCTCTGAATTGGATTATCATCAAAACGATTTCGAAACAAGGGAAATTGGTCTCTTTGATTGTGAAGAGGATGGCAATTTGGCTAAGGTTGACACCACAATCAAAAGTGGGAGAAGAGAAGATGATGGCATCTTTTTGAGACTCAGAATTGCAGATAATGAAGGTCGAATTCGAAACATCTACTTCCCATTCGACATTGAGACGGATACTGCATTGAGCGTTGCAAATGAAATGGTAACTGAGCTTGACATAACTGATCAAGATGTAGCAGATTTGGCAAATATGATAGACAATGAAATTGCAGCACTAGTTCCCAAGTGGAGAACAGGAGCCAGAATAGAGGAAAATTCAGAATGTTCAGGTGCAGGTGTCTGCCTCAATTGTGCTGCAAACGGTTACTTGTTTGATTATGTATCAAATAATCCATGTGGCAAGAATCTTCAATTTCTTCGTTGTTCTAAAAATGGATGTGCTGCAATTCATGGCCGATTTGAGGAGATAACATACCAAGTCGAAGGGTCTGCAAGTAGTGATACCGAAGGTGCACGGGATGCATCAAGCCATTCCGATGGCATTCATTATACAGATATTTGGGCCCAGAGAGATGAACCAGAGTTATGCCATGAAGAGTTAAAAGACATACACTGTGACCAAACTCATGAGGCATCAAATCCGTTGAACATCAAGGAGGAAGGAAAAGCTGTTAATGTGAATGGAGAAAGTGATCTCAATACCAAAAGGCCTCATTCAAACCCTGCAATAAATTGTATTATGTTGGATTGTGAAAATGAAATTAGGCAAGAGCTAAGATGGCTCAAAGCAAAGTACCAGATGCAGTTAAGGGAGCTTAGAGATCAACAACTGGGGGTTAAGCCAAAATTTTCTTGCATGTCTCCTGATACCAAAAAAATAAATTGTGGGAAAGATGGAATTCAGAGTTTATCAACTCAATCCAGATTGAAGATACAAAAGCATAAACCACAATTAAGATCTATAGTTTCCGGGAAGCATTTCCCTCTTGAAGACGAGAAATGCAATAATTATGCTGATCAAATGGTTCAAAATGTTGAGGAGATTAATCAGTCTAACAGTCCTGAGCGAGTGCTCACAGCCAAGGATTTCTTTACAGGAGCTTTGTTTCCAAGCTCACTTCAGAGGGCAACCTCCCTTCCCGTTGATGCAATAGATTTCTAG 2190 0.4059 MNGAACVDAECCEFVEVDPTGRYGRYNEILGKGASKTVYKAFDEYEGIEVAWNQVKLYDFLQNPEDLERLYSEIHLLKTLKHKNIMKFYTSWVDTDNRQINFVTEMFTSGTLRQYRLKHRRVNIRAVKHWCRQILEGLLYLHSHNPPVIHRDLKCDNIFINGNQGEVKIGDLGLAAILRKSNAARCVGTPEFMAPEVYEEDYNELVDIYSFGMCILEMVTFEYPYSECNHPAQIYKKVVSGKKPEALYKVVNPEVRQFVEKCLATASLRLSAKELLEDPFLQIDDYGFDSKVVQYQRDCYEVAPSIRQPLNVTYSINTSMSGYTDNLGGYGPFSELDYHQNDFETREIGLFDCEEDGNLAKVDTTIKSGRREDDGIFLRLRIADNEGRIRNIYFPFDIETDTALSVANEMVTELDITDQDVADLANMIDNEIAALVPKWRTGARIEENSECSGAGVCLNCAANGYLFDYVSNNPCGKNLQFLRCSKNGCAAIHGRFEEITYQVEGSASSDTEGARDASSHSDGIHYTDIWAQRDEPELCHEELKDIHCDQTHEASNPLNIKEEGKAVNVNGESDLNTKRPHSNPAINCIMLDCENEIRQELRWLKAKYQMQLRELRDQQLGVKPKFSCMSPDTKKINCGKDGIQSLSTQSRLKIQKHKPQLRSIVSGKHFPLEDEKCNNYADQMVQNVEEINQSNSPERVLTAKDFFTGALFPSSLQRATSLPVDAIDF 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium732g00014 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 148 160 IPR008271 GO:0004672|GO:0006468
Vium732g00014 729 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 10 638 - -
Vium732g00014 729 Gene3D - 375 465 - -
Vium732g00014 729 FunFam Probable serine/threonine-protein kinase WNK1 8 105 - -
Vium732g00014 729 Gene3D Transferase(Phosphotransferase) domain 1 107 286 - -
Vium732g00014 729 SUPERFAMILY Protein kinase-like (PK-like) 27 282 IPR011009 -
Vium732g00014 729 CDD STKc_WNK 22 281 - -
Vium732g00014 729 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 378 432 IPR024678 GO:0004674|GO:0005524
Vium732g00014 729 Coils Coil 598 618 - -
Vium732g00014 729 SMART serkin_6 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium732g00014 729 FunFam probable serine/threonine-protein kinase WNK9 107 286 - -
Vium732g00014 729 ProSiteProfiles Protein kinase domain profile. 24 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium732g00014 729 Pfam Protein kinase domain 27 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium732g00014 729 Gene3D Phosphorylase Kinase; domain 1 9 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium732g00014 Vium-Chr732 117747 121346 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium732g00014 1 512 MAP Kinase Kinase Kinase AT3G22420 57.713 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vium732g00014 Pkinase 2.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium732g00014 K08867 - gmx:100804179 1256.51