Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7322g00001 ATGAACGACCTTCTAACGGAATCATTTGAAATCCCACGTCAAAGAGGTGGTGACATTGAGTTAGGAGAATATGCGAGGAATTCAGGAGAACTGGGCTTGGAAAGTTTCTTCAGAAAGGTCCAAGAGCTTGATAAGCATTATGCTAAGCTGGATACGCTTTTGAGGAAGCTCCAGGATGCCCGTGAGGAAGCCAAAGTTGTGACTAAGGCTTCTTCAATGAAGGCTATAAAGGAGAAAATGGAGAAAGATGTTGATGAAGTTAAGAAAACTGCATATTACATAAAGTCCAGAATTGAAGAATTGGACAAAGAGAATTTGACAAACAGGCAGAAGCCTGGGTGTGGAAAAGGATCAGGTGTTGACCGCTCAAGAACAGCAACAACCATTTCTTTAAAAAAGAAACTGAAGGATAAAATGGCAGAATTTCAGACCCTAAGAGAGGTCATCCATCAAGAGTATCGTGAGGTTGTTGAGAGAAGAGTTTTTACAGTTACAGGCACAAGAGCCGATGAGGAGACAATTGACAGATTAATTGAAACTGGAGATAGTGAACAAATTTTCCAGAAGGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACCTTGGCTGAAATACAAGAGCGACATGAAGCAGTTAGAGATGTTGAGAAAAAGCTTCTTGATCTACAACAGATATTTCTGGATATTGCGGTGTTAGTGGATGGACAAGGAGAAATGCTTGACAACATTGAAACACAGGTTTCAAGTGCAGTGGATCACGTGCAGCAAGGTAACAATGCCCTTGTTAAAGCCAAGAAACTTCAAAAGAACTCCAGAAAATGGATGTGTGTTGCAATCTTGATACTTCTCATTTTTATTATAATCATCGTTGTCTCTGTCATCAAACCATGGGCTCACACAAATGGTGCATAA 915 0.4066 MNDLLTESFEIPRQRGGDIELGEYARNSGELGLESFFRKVQELDKHYAKLDTLLRKLQDAREEAKVVTKASSMKAIKEKMEKDVDEVKKTAYYIKSRIEELDKENLTNRQKPGCGKGSGVDRSRTATTISLKKKLKDKMAEFQTLREVIHQEYREVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIQERHEAVRDVEKKLLDLQQIFLDIAVLVDGQGEMLDNIETQVSSAVDHVQQGNNALVKAKKLQKNSRKWMCVAILILLIFIIIIVVSVIKPWAHTNGA 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7322g00001 304 SMART SynN_4 28 154 IPR006011 GO:0016020
Vium7322g00001 304 Pfam Syntaxin 35 238 IPR006011 GO:0016020
Vium7322g00001 304 Pfam SNARE domain 239 291 IPR000727 -
Vium7322g00001 304 CDD SNARE_syntaxin1-like 202 264 - -
Vium7322g00001 304 CDD SynN 33 190 IPR006011 GO:0016020
Vium7322g00001 304 Gene3D - 194 296 - -
Vium7322g00001 304 Coils Coil 40 90 - -
Vium7322g00001 304 SMART tSNARE_6 198 265 IPR000727 -
Vium7322g00001 304 ProSitePatterns Syntaxin / epimorphin family signature. 209 248 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vium7322g00001 304 Gene3D - 31 157 - -
Vium7322g00001 304 PANTHER SYNTAXIN 36 289 IPR045242 -
Vium7322g00001 304 FunFam Syntaxin 132 196 296 - -
Vium7322g00001 304 SUPERFAMILY t-snare proteins 32 258 IPR010989 GO:0016020|GO:0016192
Vium7322g00001 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 203 265 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7322g00001 Vium-Chr7322 5224 24993 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7322g00001 1 304 SNARE and Associated Proteins AT3G03800 73.529 3.02e-155 434
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7322g00001 K08486 - gmx:100306329 508.449