Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7319g00002 ATGGGTCACCATTCTTGCTGTAACCAACAGAAGGTTAAGAGAGGCCTTTGGTCTCCCGAGGAAGACGAGAAGCTCATCAGATACATTACCACTCACGGCTATGGTTGCTGGAGTGAAGTTCCAGAGAAAGCTGGGCTTCAAAGGTGTGGGAAGAGTTGTCGTTTGAGATGGATTAATTATTTGAGGCCTGATATTAGAAGAGGAAGGTTTACACCTGAAGAGGAGAAGTTAATTATAAGTCTTCACGGGGTTGTTGGCAACAGATGGGCGCACATTGCAAGCCACTTACCAGGTAGAACTGACAATGAAATAAAGAACTATTGGAATTCTTGGATCAAAAAGAAAATTAGAAAGCCTTCGGTGACTTCATCAATCACCACTACACAGAGTGTGGATCACCACCCTCAGTTCAATTATAGTTCCAACCAACTAGATCACTTTGGCAACCAAGACAACGTAACAACAAAACCAGCGGTGCAAGAAACCATATTTTCCTCGACGTGCCCTCTATTTATGTTTGACACTAGTTCGTTAGACCACGGGACAACAACAGTAGACACCAGCAATGTTCGAGCAGAACTGTTCCAAGATTCATTGGGTTTGAGCAGCGAAACGTGGAACTTGAGCCACCACCAAGTCCATCAAGCTCTTCCTCCTCAACCAGCACCGGCAGCAGCAACTTTTACAGCAGCTACAGTGATTGATAGTACGAATTATCTGCCACCATTGATAGAGAATGTGGAAAACATGGTGCCAAACATGGAAGTGCAGGGTTGTAGTATAGACGAGGAAGGAGAAATGGCACTGGAGTGTTTGCGGAGACAAGAGTTGAATGAGTGGGTGGAGAATCAACAACACTGTCCCAGTTTTCTTTTCTGGGACAGCGTTGAAGGACAACTTGGGGGGGAAGAACTAGCACCAAACACGTCAAATATTGGAACCAATACACTTTCACCTTTTCCTTCATCTTTATGA 975 0.4462 MGHHSCCNQQKVKRGLWSPEEDEKLIRYITTHGYGCWSEVPEKAGLQRCGKSCRLRWINYLRPDIRRGRFTPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKKIRKPSVTSSITTTQSVDHHPQFNYSSNQLDHFGNQDNVTTKPAVQETIFSSTCPLFMFDTSSLDHGTTTVDTSNVRAELFQDSLGLSSETWNLSHHQVHQALPPQPAPAAATFTAATVIDSTNYLPPLIENVENMVPNMEVQGCSIDEEGEMALECLRRQELNEWVENQQHCPSFLFWDSVEGQLGGEELAPNTSNIGTNTLSPFPSSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7319g00002 324 FunFam Transcription factor MYB26 68 137 - -
Vium7319g00002 324 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium7319g00002 324 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vium7319g00002 324 CDD SANT 69 112 IPR001005 -
Vium7319g00002 324 PANTHER MYB DOMAIN PROTEIN 55 1 242 - -
Vium7319g00002 324 CDD SANT 17 61 IPR001005 -
Vium7319g00002 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium7319g00002 324 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium7319g00002 324 SMART sant 66 114 IPR001005 -
Vium7319g00002 324 SMART sant 13 63 IPR001005 -
Vium7319g00002 324 Gene3D - 68 139 - -
Vium7319g00002 324 Gene3D - 6 66 - -
Vium7319g00002 324 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium7319g00002 324 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium7319g00002 324 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium7319g00002 324 MobiDBLite consensus disorder prediction 304 324 - -
Vium7319g00002 324 FunFam MYB transcription factor 6 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7319g00002 Vium-Chr7319 10138 12586 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7319g00002 1 308 MYB Transcription Factor Family AT1G63910 51.247 9.25e-105 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium7319g00002 Myb_DNA-binding 4.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7319g00002 K09422 K02947 gmx:100797787 575.089