Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7315g00002 ATGTTGAGCCGGGCGTCAAATGTTTCGGCCGAAGAAGTGGTTGGTTCTGGTGACGGTGAGGATGAGCTGTATGAACAGCAATGGAAGGCTTGCGCGGGACCACTAGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTTCAAGTCCTGATCCGTGCACTGCTGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACGGCTTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCAGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCATCTGTGATCTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACCCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCCGCTGAGACTGACAAAAGATTTTCGGGTACCATTGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTGAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCGTGGGAAATAGAGCCATTTGTAGCTTCTTCTACACCCTCGGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAAGTTCCAGATGTTGATGCAACATCCGCTGCTTCTGTTTTCTGGGATACTGATCTGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACAGAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTATCGTCTCCCCATTCCAGTTGTCCATCTCAATTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCGTCCAGATTGAACAATGAGCATGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCATCTGCTGTAGAGAAGGCATCTCCGCATGCAGTAAATGTACCCAAAGTTACTACTGAAGGATGTACTAGCACCTTGTCCCAAACAGATGCTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTGTCTCCGAAGGAGTCTCAGAGCAAGCAAATTTCTAGAAGTCGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACAATGTTGGATGGTTATAATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGGAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTGTAATAAGCTCAGATACAACTGAAACCTGA 2082 0.4606 MLSRASNVSAEEVVGSGDGEDELYEQQWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPSSPDPCTAEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASSTPSVQPTIVKTKRPRPSSEVPDVDATSAASVFWDTDLPQPDTTQINVLAESKQNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSQLFQDTTDDSKSVSAWPVSKPHPSRLNNEHVLDQVDKESKVETATSYRLFGIDLIDHSRNSSAVEKASPHAVNVPKVTTEGCTSTLSQTDAGHMSEVPKASSKERKQEQQQVSPKESQSKQISRSRTKVQMQGVAVGRAVDLTMLDGYNQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTVISSDTTET 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7315g00002 693 Gene3D - 577 670 - -
Vium7315g00002 693 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 670 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7315g00002 693 Pfam Auxin response factor 254 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7315g00002 693 Pfam B3 DNA binding domain 128 228 IPR003340 GO:0003677
Vium7315g00002 693 MobiDBLite consensus disorder prediction 428 472 - -
Vium7315g00002 693 MobiDBLite consensus disorder prediction 535 553 - -
Vium7315g00002 693 CDD B3_DNA 126 228 IPR003340 GO:0003677
Vium7315g00002 693 Gene3D - 125 229 IPR015300 -
Vium7315g00002 693 MobiDBLite consensus disorder prediction 555 569 - -
Vium7315g00002 693 Gene3D - 289 363 - -
Vium7315g00002 693 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Vium7315g00002 693 FunFam Auxin response factor 126 230 - -
Vium7315g00002 693 MobiDBLite consensus disorder prediction 428 483 - -
Vium7315g00002 693 FunFam Auxin response factor 577 670 - -
Vium7315g00002 693 FunFam Auxin response factor 289 362 - -
Vium7315g00002 693 SMART B3_2 128 230 IPR003340 GO:0003677
Vium7315g00002 693 MobiDBLite consensus disorder prediction 521 586 - -
Vium7315g00002 693 MobiDBLite consensus disorder prediction 570 586 - -
Vium7315g00002 693 ProSiteProfiles PB1 domain profile. 582 663 IPR000270 GO:0005515
Vium7315g00002 693 SUPERFAMILY DNA-binding pseudobarrel domain 119 257 IPR015300 -
Vium7315g00002 693 Pfam AUX/IAA family 625 666 IPR033389 -
Vium7315g00002 693 Pfam AUX/IAA family 560 618 IPR033389 -
Vium7315g00002 693 SUPERFAMILY CAD & PB1 domains 584 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7315g00002 Vium-Chr7315 2049 6433 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7315g00002 19 675 B3 DNA Binding Superfamily AT4G23980 58.309 0.0 712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7315g00002 AUX_IAA 4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7315g00002 K14486 - gmx:100779003 1244.18