Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7315g00001 ATGTTGAGCCGGGCGTCAAATGTTTCGGCCGAAGTGGTTGGTTCTGGTGACGGTGAGGATGAGCTGTATGAACAGCAATGGAAGGCTTGCGCGGGACCACTAGTGGATGTTCCTCGTGTTGGCCAGAGAGTGTTCTATTTTCCACAAGGCCACATGGAGCAATTAGAGGCTTCAACCAACCAGGAATTGAATCAGAGGATTCCTCTGCTGCACCTTCCCACGAAGATCCTTTGTCGCGTCGTGAACGTTCATTTACTGGCTGAGCAAGAAACGGATGAGGTTTATGCGCAGATCACTTTGGTGCCGGAATCTAATCAAGATGAGCCTTCAAGTCCTGATCCGTGCACTGCTGAACCTACAAGGGCACCGGCTCACTCGTTCTGCAAGGTCTTGACGGCTTCTGATACTAGCACCCATGGTGGCTTCTCTGTTCTCAGGAAACATGCCACTGAGTGCCTTCCTGCATTGGATATGTCCCAACCAACACCAACCCAGGAATTGGTTGCAAAGGATCTTCATGGTTATGAATGGCGGTTTAAGCATATATTTAGAGGTCAGCCACGCAGACACTTGCTCACAACTGGATGGAGTACTTTTGTGACTTCCAAAAGATTAGTTGCAGGGGATACCTTTGTGTTCTTGAGAGGGGACAATGGGGAATTACGTGTCGGAGTGAGACGTCTAGCTCGCCAGGCAAGTAGCATGCCTTCATCTGTGATCTCCAGTCAAAGCATGCACCTGGGAGTTCTTGCAACTGCCTCTCATGCTGTTGCAACCCAGACTCTTTTTGTGGTATATTATAAGCCAAGGACGAGCCAGTTCATCATTGGAGTGAACAAGTATTTGGAGGCTGTGAGCACGAAGTTTGGTGTTGGCATGAGGTTTAAGATGAGATTCGAGGGGGATGATTCCGCTGAGACTGACAAAAGATTTTCGGGTACCATTGTTGGAATTGAAGATATTTCTCCTCATTGGGAAAATTCAAAATGGCGATCGCTGAAGGTTCAATGGGATGAACTTGCAGCTGTTCCAAGACCTGAGAGGGTTTCACCGTGGGAAATAGAGCCATTTGTAGCTTCTTCTACACCCTCGGTTCAACCCACTATTGTGAAGACTAAAAGGCCCCGACCATCCAGCGAAGTTCCAGATGTTGATGCAACATCCGCTGCTTCTGTTTTCTGGGATACTGATCTGCCACAGCCTGATACGACACAAATCAATGTTTTGGCCGAAAGCAAACAGAATGACAATACTGGTACATGGCATCATATGCAAACTGACATGAATAGTAAAAGCAACAGCAACAACACTATGTTAAGGAATCAGACCGAAGGAAGTTGGCTATCGTCTCCCCATTCCAGTTGTCCATCTCAATTGTTTCAAGACACAACAGATGATAGCAAGAGCGTCTCAGCTTGGCCTGTTTCAAAGCCTCATCCGTCCAGATTGAACAATGAGCATGTGCTTGACCAAGTTGACAAGGAGAGCAAAGTTGAGACTGCTACAAGTTATCGGTTGTTTGGAATTGATCTTATTGATCATTCTAGGAACTCATCTGCTGTAGAGAAGGCATCTCCGCATGCAGTAAATGTACCCAAAGTTACTACTGAAGGATGTACTAGCACCTTGTCCCAAACAGATGCTGGCCATATGTCGGAGGTACCAAAGGCTTCTTCCAAGGAGAGGAAACAAGAACAGCAACAAGTGTCTCCGAAGGAGTCTCAGAGCAAGCAAATTTCTAGAAGTCGCACTAAGGTTCAAATGCAGGGTGTTGCAGTGGGTCGTGCTGTAGATTTAACAATGTTGGATGGTTATAATCAACTTATAAATGAATTAGAGGAGATGTTTGACATAAAGGGACAGCTTCAACACAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGTGACATGATGCTTGTGGGAGATGATCCATGGCCTGAATTCTGTAGTATGGTGAGGAGAATCTTCATTTGCTCCAGTCAGGATGTGAAGAAGATGAACTGTGGAAGCAAACTGCCAATCTCTTCAGTGGAAGATGGGACTGTAATAAGCTCAGATACAACTGAAACCTGA 2079 0.4608 MLSRASNVSAEVVGSGDGEDELYEQQWKACAGPLVDVPRVGQRVFYFPQGHMEQLEASTNQELNQRIPLLHLPTKILCRVVNVHLLAEQETDEVYAQITLVPESNQDEPSSPDPCTAEPTRAPAHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSQPTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGDNGELRVGVRRLARQASSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIIGVNKYLEAVSTKFGVGMRFKMRFEGDDSAETDKRFSGTIVGIEDISPHWENSKWRSLKVQWDELAAVPRPERVSPWEIEPFVASSTPSVQPTIVKTKRPRPSSEVPDVDATSAASVFWDTDLPQPDTTQINVLAESKQNDNTGTWHHMQTDMNSKSNSNNTMLRNQTEGSWLSSPHSSCPSQLFQDTTDDSKSVSAWPVSKPHPSRLNNEHVLDQVDKESKVETATSYRLFGIDLIDHSRNSSAVEKASPHAVNVPKVTTEGCTSTLSQTDAGHMSEVPKASSKERKQEQQQVSPKESQSKQISRSRTKVQMQGVAVGRAVDLTMLDGYNQLINELEEMFDIKGQLQHRNKWEIVFTDDEGDMMLVGDDPWPEFCSMVRRIFICSSQDVKKMNCGSKLPISSVEDGTVISSDTTET 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7315g00001 692 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Vium7315g00001 692 Gene3D - 288 362 - -
Vium7315g00001 692 Gene3D - 576 669 - -
Vium7315g00001 692 Pfam Auxin response factor 253 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vium7315g00001 692 FunFam Auxin response factor 576 669 - -
Vium7315g00001 692 FunFam Auxin response factor 125 229 - -
Vium7315g00001 692 MobiDBLite consensus disorder prediction 427 482 - -
Vium7315g00001 692 ProSiteProfiles PB1 domain profile. 581 662 IPR000270 GO:0005515
Vium7315g00001 692 FunFam Auxin response factor 288 361 - -
Vium7315g00001 692 MobiDBLite consensus disorder prediction 534 552 - -
Vium7315g00001 692 CDD B3_DNA 125 227 IPR003340 GO:0003677
Vium7315g00001 692 Pfam AUX/IAA family 624 665 IPR033389 -
Vium7315g00001 692 Pfam AUX/IAA family 559 617 IPR033389 -
Vium7315g00001 692 MobiDBLite consensus disorder prediction 554 568 - -
Vium7315g00001 692 Gene3D - 124 228 IPR015300 -
Vium7315g00001 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 21 669 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vium7315g00001 692 SMART B3_2 127 229 IPR003340 GO:0003677
Vium7315g00001 692 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Vium7315g00001 692 MobiDBLite consensus disorder prediction 520 585 - -
Vium7315g00001 692 SUPERFAMILY DNA-binding pseudobarrel domain 118 256 IPR015300 -
Vium7315g00001 692 MobiDBLite consensus disorder prediction 569 585 - -
Vium7315g00001 692 MobiDBLite consensus disorder prediction 427 471 - -
Vium7315g00001 692 SUPERFAMILY CAD & PB1 domains 583 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7315g00001 Vium-Chr7315 2049 6433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7315g00001 18 674 B3 DNA Binding Superfamily AT4G23980 58.309 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vium7315g00001 AUX_IAA 4e-11 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7315g00001 K14486 - gmx:100779003 1247.26