LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium730g00003	ATGGGGTGTGTGATTAGCAGGGAGGTGTCGAAGGGGATAATCTCTGAGGTGAAGGAGGAGAAGGGTTTGAGTGGTCAGAGTAAGAGGAAGGTTGATGGAGTGTCGGGGAGCAAGAGTGAGGTTGTGGTAGAGGTTCAGAATGGCGAGGAGAAGGAGAAGGAGAAGGGTGGTGGTGAAGGGGTGCAACGGCCTCGAGGCGAAAGGAGGAGATCGAAGGCGAATCCGAGGCTGAGCAATCTGCCCAAACATTTGCGGGGGGAGCAGGTTGCTGCTGGATGGCCGCCGTGGCTCACTGCAGTGTGTGGGGAAGCACTCAGTGGCTGGATTCCGCGAAAGGCAGACACCTTTGAGAAAATTGATAAGATTGGACAAGGAACTTATAGTAATGTGTACAAAGCTAAAGACACAATGACTGGTAAAATTGTTGCCCTAAAGAAGGTTCGTTTTGACAATTTAGAACCTGAGAGTGTAAAATTCATGGCGAGAGAGATTCTTATTTTGCGAAGGTTGGACCATCCCAATGTTGTAAAGTTGCAAGGTTTAGTTACGTCAAGGATGTCCTGTAGTTTGTATTTGGTGTTCGATTACATGGATCATGATTTGGCTGGACTTGCTGCAAGCCCAGGAATCAGATTCACAGAGCCTCAGGTAAAATGTTACATGCATCAGCTGCTATCAGGACTTGAGCACTGTCATAGCCGTCATGTACTTCACCGTGATATTAAAGGGTCAAATCTTCTTATTGACAATGAAGGAACACTTAAGATTGCCGACTTTGGATTGGCTTCTATTTTTGATCCAAACCATAAGCATCCAATGACTAGTCGTGTAGTAACCCTTTGGTATCGACCTCCTGAGCTGCTCCTTGGTGCCACAGATTATAGTGTGGGTGTAGACCTCTGGAGTGCTGGATGTATTTTAGGAGAATTATTGGCTGGGAAACCAATCATGCCTGGTCGTACAGAGGTGGAACAACTGCACAAGATATACAAACTATGTGGTTCACCTTCAGATGAGTTTTGGAAGAAGTCAAAGTTGCCTAATGCTACCTTGTTTAAACCGCGAGAGCCATACAAGAGGCGCATAAGAGAGATTTTTAAAGATTTTCCATCTTCTGCTCTACCCCTCATTGATACACTTCTCGCGATTGATCCTGTAGAACGGGAAACTGCCTCAGATGCTTTGAGAAGTGAGTTCTTTACCACAGAACCTTATGCTTGTGATCCTTCTAGTCTTCCAAAATATCCCCCAAGCAAGGAAATGGATGCTAAACGAAGGGATGATGAAATGAGGAGACTAAGAGCTGCTGGCAAAGCTCAGGCTGATGGCCCCAAGAAGCATCGTACTCGTGATCGTGGAACAAAAGCTTTTCCTGCTCCTGAAGCCAATGCTGAGCTTCAATCGAATATTGATAGAAGAAGGCTAATCACTCATGCAAATGCCAAGAGCAAGAGTGAAAAGTTCCCTCCACCACATCAAGATGGACAACTTGGTTTTCCTTTGGGTTCTTCCCATCATATTGATCCGGATACTGTTCCAACTGATGTCTCTTTCACATCAACCTCTTATACCTATTCAAAGGAACCATTCCAAGCTTGGTCTGGTCCCATTGGCAATGCTGCTGACATTGGAGTACCAAAGCGGAAGAAACACACTGCAGGTGATGCATTGGATTTATCAAAACCACAGAAAGATTCTCTCAAGGACAAGATTAAAGGAAAGAAAATCATAGCTTAG	1737	0.4525	MGCVISREVSKGIISEVKEEKGLSGQSKRKVDGVSGSKSEVVVEVQNGEEKEKEKGGGEGVQRPRGERRRSKANPRLSNLPKHLRGEQVAAGWPPWLTAVCGEALSGWIPRKADTFEKIDKIGQGTYSNVYKAKDTMTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLQGLVTSRMSCSLYLVFDYMDHDLAGLAASPGIRFTEPQVKCYMHQLLSGLEHCHSRHVLHRDIKGSNLLIDNEGTLKIADFGLASIFDPNHKHPMTSRVVTLWYRPPELLLGATDYSVGVDLWSAGCILGELLAGKPIMPGRTEVEQLHKIYKLCGSPSDEFWKKSKLPNATLFKPREPYKRRIREIFKDFPSSALPLIDTLLAIDPVERETASDALRSEFFTTEPYACDPSSLPKYPPSKEMDAKRRDDEMRRLRAAGKAQADGPKKHRTRDRGTKAFPAPEANAELQSNIDRRRLITHANAKSKSEKFPPPHQDGQLGFPLGSSHHIDPDTVPTDVSFTSTSYTYSKEPFQAWSGPIGNAADIGVPKRKKHTAGDALDLSKPQKDSLKDKIKGKKIIA	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium730g00003	578	Pfam	Protein kinase domain	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium730g00003	578	SMART	serkin_6	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	407	467	-	-
	Vium730g00003	578	ProSitePatterns	Protein kinases ATP-binding region signature.	122	145	IPR017441	GO:0005524
	Vium730g00003	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	236	248	IPR008271	GO:0004672\|GO:0006468
	Vium730g00003	578	CDD	STKc_CDK9_like	116	400	-	-
	Vium730g00003	578	PANTHER	CELL DIVISION PROTEIN KINASE	114	404	-	-
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	418	455	-	-
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	544	578	-	-
	Vium730g00003	578	Gene3D	Phosphorylase Kinase; domain 1	103	198	-	-
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	529	578	-	-
	Vium730g00003	578	FunFam	probable serine/threonine-protein kinase At1g54610	103	198	-	-
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	16	83	-	-
	Vium730g00003	578	SUPERFAMILY	Protein kinase-like (PK-like)	111	407	IPR011009	-
	Vium730g00003	578	MobiDBLite	consensus disorder prediction	44	74	-	-
	Vium730g00003	578	Gene3D	Transferase(Phosphotransferase) domain 1	199	440	-	-
	Vium730g00003	578	ProSiteProfiles	Protein kinase domain profile.	116	400	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vium730g00003	578	FunFam	probable serine/threonine-protein kinase At1g54610	199	440	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium730g00003	Vium-Chr730	24587	28939	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium730g00003	108	440	Core Cell Cycle Gene Families	AT5G10270	53.009	1.33e-125	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CMGC_CDK-CRK7-CDK9	Vium730g00003		Pkinase	1.5e-67	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium730g00003	K08819		-	gmx:100786837	1064.29