Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7307g00004 ATGGCCTCTTCCGATATTGATTGGGACAGGCTAGATAAAAAGAAGTTCTATGTCGTGGGAGCAGGACTCTTTACAGGTGTTACAGTAGCACTCTACCCGGTTTCTGTTGTGAAAACTAGGCTGCAGGTTGCTTCAAAGGATACTCTGGAGAGAAGTGCATTATCTGTTGTGAAAGGATTACTTAAAACGGATGGCATTCGTGGTTTGTATAAAGGGTTTTTTACAGTTATGACTGGTACAATTCCTACCAGAATCATATTTCTTACTGCCTTGGAGACCACAAAGGTGGCTTCCCTCAGGATGCTGGAGCCATTTAGACTATCTGATACCACCCAGGCTGCCATATCAAATGGAGTAGCAGGCATGACATCATCACTTTTGGCACAAGCTATGTTTGTTCCAATTGATGTGGTTAGCCAAAAGTTGATGGTGCAAGGATACTCTGGCCATACGCAATATAGGGGGGGTTTGGATGTTGCTCGTAAGGTGTTAAGGTCTGATGGCATTAGGGGATTATATAGAGGATTTGGTCTATCTGTCGTGACATATGTACCATCTAGTGCTGTGTGGTGGGCAAGTTATGGCTCAAGTAAACATTACTTATGGAGAATCTTGGGGGATAACTCCAGTGAGGAAGGCACTCCTAGTCTACTAAAGATTATGTTAGTTCAGGCTACTGGAGGGATCATTGCTGGTGCTACTGCATCCTGTATTACAACCCCGTTGGATACAATCAAGACACGGTTACAGGTGACTGGACTTGAAAAGAAAATCTCTGTAAAACAAGTTGTTAAAGATTTGATTCTTGAAGATGGTTGGAAAGGTTTATATAGAGGATTAGGTCCAAGGTTTTTCAGCATGTCAGCGTGGGGCACTTCAATGATTCTGGCTTATGAATATCTGAAGCGCGTGTGTGCAAAGGATGAAGATGTGTAA 936 0.4295 MASSDIDWDRLDKKKFYVVGAGLFTGVTVALYPVSVVKTRLQVASKDTLERSALSVVKGLLKTDGIRGLYKGFFTVMTGTIPTRIIFLTALETTKVASLRMLEPFRLSDTTQAAISNGVAGMTSSLLAQAMFVPIDVVSQKLMVQGYSGHTQYRGGLDVARKVLRSDGIRGLYRGFGLSVVTYVPSSAVWWASYGSSKHYLWRILGDNSSEEGTPSLLKIMLVQATGGIIAGATASCITTPLDTIKTRLQVTGLEKKISVKQVVKDLILEDGWKGLYRGLGPRFFSMSAWGTSMILAYEYLKRVCAKDEDV 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7307g00004 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 112 200 IPR018108 -
Vium7307g00004 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 97 IPR018108 -
Vium7307g00004 311 PRINTS Mitochondrial carrier protein signature 173 191 IPR002067 GO:0055085
Vium7307g00004 311 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085
Vium7307g00004 311 PRINTS Mitochondrial carrier protein signature 228 250 IPR002067 GO:0055085
Vium7307g00004 311 SUPERFAMILY Mitochondrial carrier 9 301 IPR023395 -
Vium7307g00004 311 ProSiteProfiles Solute carrier (Solcar) repeat profile. 219 304 IPR018108 -
Vium7307g00004 311 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 3 309 - -
Vium7307g00004 311 Pfam Mitochondrial carrier protein 224 308 IPR018108 -
Vium7307g00004 311 Pfam Mitochondrial carrier protein 21 96 IPR018108 -
Vium7307g00004 311 Pfam Mitochondrial carrier protein 115 202 IPR018108 -
Vium7307g00004 311 Gene3D Mitochondrial carrier domain 16 310 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7307g00004 Vium-Chr7307 27541 32362 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7307g00004 6 309 Chloroplast and Mitochondria Gene Families AT5G15640 71.661 4.84e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7307g00004 K15121 - gmx:100819519 528.865