Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7306g00001 ATGTTCTCTTTTCTTCTTTTGCTTTCTGCAATGGAAGACGAGCCTTTTCTCACAACAACAACACTCGCTTCCCAACGGGCCGATTTCCACTTGCAATCTTCCAAGTCCTTCGACGACGTCACGGCGCCACGCGCCGCCCGTAACGCCGAGATTCAAGAACACCTCTCCCAACCCTCTCCCTTTCACTCCAAGAAGAAAAAGCTCAGTCGTTGCAAGACAGCACCCGCCCTGGTTAGCATGCGAGACCTCAAACCTAAGACGCCCGAAGTCCCCAAGCCTCAGTCCAGTTCCATAATCCGCCAAGGCATGTGCTTACTCGCCATGTACCTCTGTGTGGGAGTCGCCATTTACTCTTTCAACAGGGACAATTTCTCAGGCATCGAGACCCACCCCTTGGTCGATGCCCTTTACTTTTGTATAGTTACCATGTGTACCATAGGTTACGGAGACATCGCTCCCTTGACCCCGCTTACAAAGGTTTTCGCTTGTGTCTTTGTTCTGGTGGGGTTCGGCTTTATAGACATACTCCTCAGTGGCCTTGTCAACTTTGTTTTGGATGTGCAAGAGAACATGATCCTCACGGGGCTCCAAATGGGTGCAACTGGGAGGGAGGGCTTTTCTGCCCGGAACTACATCGTTGATGTGGTGAAGGGGAGGATGAGGATCAGGTTGAAGGTTGGTTTGGCGCTTGGGGTTGTTGTGCTTTGTATTGGAATTGGGTGTTTGGTTTTGTACTTTGTGGAGGGCTTGGATTTGATTGATTCTATTTACTTGTCAGTCATGTCTGTCACAACGGTTGGGTATGGGGACAGGGCGTTTAAGACACTTCCCGGTCGGTTATTTGCTGCTATTTGGTTGCTCTTTTCAACTTTGATGGTTGCACGGGCTTTCCTCTATTTGGCAGAGGCCAGAATTAATAGAAGGCATCGCAGAATGGCCAACAAGGTGTTGCAGAGAGAAATTACTGTTGAGGATTTGCTTGCTGCTGATATCAACCACACCGGTTTCATCAGCAAGTCTGAGTATGTAATCTTCAAGCTGAAAGAGATGGGTAAAATACAGGAAAAAGATGTGTTGCAAATTTGTGACCAATTCAGGAAGCTTGACCCTTCTGACTGTGGGAAGATAACACTGCCTCATCTCTTAGGGGGCACTTTATGA 1161 0.4841 MFSFLLLLSAMEDEPFLTTTTLASQRADFHLQSSKSFDDVTAPRAARNAEIQEHLSQPSPFHSKKKKLSRCKTAPALVSMRDLKPKTPEVPKPQSSSIIRQGMCLLAMYLCVGVAIYSFNRDNFSGIETHPLVDALYFCIVTMCTIGYGDIAPLTPLTKVFACVFVLVGFGFIDILLSGLVNFVLDVQENMILTGLQMGATGREGFSARNYIVDVVKGRMRIRLKVGLALGVVVLCIGIGCLVLYFVEGLDLIDSIYLSVMSVTTVGYGDRAFKTLPGRLFAAIWLLFSTLMVARAFLYLAEARINRRHRRMANKVLQREITVEDLLAADINHTGFISKSEYVIFKLKEMGKIQEKDVLQICDQFRKLDPSDCGKITLPHLLGGTL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7306g00001 386 PRINTS Two pore domain K+ channel signature 141 169 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium7306g00001 386 PRINTS Two pore domain K+ channel signature 264 273 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium7306g00001 386 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 133 359 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vium7306g00001 386 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Vium7306g00001 386 SUPERFAMILY Voltage-gated potassium channels 216 324 - -
Vium7306g00001 386 Gene3D - 82 194 - -
Vium7306g00001 386 Gene3D - 208 329 - -
Vium7306g00001 386 FunFam Two-pore potassium channel 3 209 323 - -
Vium7306g00001 386 SUPERFAMILY Voltage-gated potassium channels 99 188 - -
Vium7306g00001 386 Pfam Ion channel 234 302 IPR013099 -
Vium7306g00001 386 Pfam Ion channel 106 184 IPR013099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7306g00001 Vium-Chr7306 705 3392 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7306g00001 22 386 Ion Channels AT4G01840 63.172 8.14e-162 458
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7306g00001 K05389 - gmx:100780438 613.609