Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7299g00003 ATGCTTCCGCGGCGGTGCACGGCGTCAGCGGCGGCGGGGCAGACGGGGAACAGCGACAGCGACTTGGATGAGTTTATTATGCGGTGCCTCTCCTGCGAGGAGCAATACGACATGATGGACTCCGGAACCTGCAGGGAGTGCTACCAAGAGGCCAACGAGGCCGAGGAGGAGCTCCGCCTCGAGATCGATGACCTCAAGTCCAAGGTCTCCTTCCTCACACTCTCCTCTCCCACTGTCAATCCTTCTACCGCTGATATCGTCCTCGTTCCCGTCGACGACTCCGACGCCACTCCCATTCCCGCTCACAAGCATGTTCTGGTTAGTCGCTCTCCTGTTTTCAATGCAATGCTTGAGAATGATATGGAGGAAAGGCGGAGTGGCACCATCAAGATTTCTGACGTATCACATGATACCCTCCGCGCTTTTGTTAACTACTTATACACTGCTGAAGCGCCCCTTGATAACCAAATGGCCTGTAACCTGTTGGTTTTGGGAGAAAAGTATCAAGTGAAGCATCTGAAGACATATTGTGAGAAGTATTTGATCGCCAAAATGAATTGGAATAGGGCTATTGCAAACTATGCCTTTGCATATCAATACAATTGCAAACAATTACGAAGTGCGTCCTTGGCAGTGATCTTGGACAAAATGGATTTGCTCACTCAAAACGAATATTATGCGGAGCTCGTGGACACCAATCCTCGTCTTGTTGTGGAAATATATGAAACATATATTGGCAAGCAGTTAAACACCGCAGGCACCTTTTAG 768 0.4948 MLPRRCTASAAAGQTGNSDSDLDEFIMRCLSCEEQYDMMDSGTCRECYQEANEAEEELRLEIDDLKSKVSFLTLSSPTVNPSTADIVLVPVDDSDATPIPAHKHVLVSRSPVFNAMLENDMEERRSGTIKISDVSHDTLRAFVNYLYTAEAPLDNQMACNLLVLGEKYQVKHLKTYCEKYLIAKMNWNRAIANYAFAYQYNCKQLRSASLAVILDKMDLLTQNEYYAELVDTNPRLVVEIYETYIGKQLNTAGTF 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7299g00003 255 PANTHER SPECKLE-TYPE POZ PROTEIN 70 250 - -
Vium7299g00003 255 ProSiteProfiles BTB domain profile. 84 155 IPR000210 GO:0005515
Vium7299g00003 255 SMART BTB_4 84 185 IPR000210 GO:0005515
Vium7299g00003 255 Pfam BTB/POZ domain 82 183 IPR000210 GO:0005515
Vium7299g00003 255 Gene3D - 187 254 - -
Vium7299g00003 255 Gene3D Potassium Channel Kv1.1; Chain A 51 186 IPR011333 -
Vium7299g00003 255 SUPERFAMILY POZ domain 79 182 IPR011333 -
Vium7299g00003 255 Coils Coil 48 68 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Vium7299g00003 BTB 3.1e-21 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7299g00003 K10523 - gmx:100794118 422.55